Variant report

Variant	rs56094154
Chromosome Location	chr2:7402848-7402849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1525493	0.81[EUR][1000 genomes]
rs1525497	0.89[EUR][1000 genomes]
rs17628624	0.95[EUR][1000 genomes]
rs17680254	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55947224	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56083950	0.81[EUR][1000 genomes]
rs56151241	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56253063	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72770010	0.81[EUR][1000 genomes]
rs72770034	0.86[EUR][1000 genomes]
rs72770043	0.88[EUR][1000 genomes]
rs72770047	0.94[EUR][1000 genomes]
rs72770054	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72770062	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72785663	0.81[EUR][1000 genomes]
rs72785665	0.81[EUR][1000 genomes]
rs7574754	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7395600-7403000	Weak transcription	Brain Anterior Caudate	brain
2	chr2:7397200-7404200	Weak transcription	Fetal Brain Female	brain
3	chr2:7397600-7403000	Weak transcription	Dnd41	blood
4	chr2:7399400-7403400	Weak transcription	Primary T cells from cord blood	blood
5	chr2:7399800-7403000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:7400200-7410000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:7400200-7428600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:7402000-7403600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:7402400-7403200	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:7402800-7403200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr2:7402800-7403200	Enhancers	Brain Hippocampus Middle	brain
12	chr2:7402800-7403200	Enhancers	Fetal Brain Male	brain
13	chr2:7402800-7403400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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