Variant report

Variant	rs72770054
Chromosome Location	chr2:7385993-7385994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1525493	0.84[EUR][1000 genomes]
rs1525497	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17628624	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680254	0.86[AFR][1000 genomes]
rs55947224	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56083950	0.84[EUR][1000 genomes]
rs56094154	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56151241	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56253063	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72770010	0.84[EUR][1000 genomes]
rs72770034	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72770043	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72770047	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72770062	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72785663	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72785665	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7574754	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7372000-7388400	Weak transcription	Pancreas	Pancrea
2	chr2:7378000-7388400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:7381600-7387000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:7383200-7399800	Weak transcription	Spleen	Spleen
5	chr2:7385400-7386400	Enhancers	Fetal Brain Male	brain
6	chr2:7385400-7386600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:7385400-7386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:7385600-7386200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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