Variant report

Variant	rs56097266
Chromosome Location	chr3:56752931-56752932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12233433	0.82[AMR][1000 genomes]
rs13319627	0.86[AMR][1000 genomes]
rs3732511	0.86[AMR][1000 genomes]
rs41276471	0.86[AMR][1000 genomes]
rs55651418	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56028948	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56031438	0.89[AMR][1000 genomes]
rs56152533	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6770654	0.84[AMR][1000 genomes]
rs6773569	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6777946	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6778753	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6780940	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6781979	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6781995	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6783263	0.84[AMR][1000 genomes]
rs6805864	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6808707	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7427683	0.86[AMR][1000 genomes]
rs7427684	0.86[AMR][1000 genomes]
rs7617179	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7627227	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7650042	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9311618	0.86[AMR][1000 genomes]
rs9311619	0.86[AMR][1000 genomes]
rs9755927	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9757026	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9810507	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9810658	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9810778	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9816311	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9826255	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9826362	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9826563	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9835767	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9845925	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9855217	0.86[AMR][1000 genomes]
rs9864273	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9864804	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9865146	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9882705	0.86[AMR][1000 genomes]
rs9883232	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56734800-56756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:56739400-56758600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:56742200-56753000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:56752000-56756800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:56752000-56758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:56752000-56758800	Weak transcription	Thymus	Thymus
7	chr3:56752200-56757200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:56752400-56755400	Weak transcription	Primary T cells from cord blood	blood
9	chr3:56752400-56755400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:56752400-56756600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:56752400-56756600	Weak transcription	Fetal Thymus	thymus
12	chr3:56752400-56756800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:56752400-56757000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:56752600-56755000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:56752600-56755600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:56752600-56757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:56752600-56758600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:56752600-56758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:56752800-56755200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr3:56752800-56757000	Weak transcription	Dnd41	blood

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