Variant report

Variant	rs6777946
Chromosome Location	chr3:56752009-56752010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1009118	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1009119	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11919114	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11919130	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11919184	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12233433	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13061142	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13095559	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13319627	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1489948	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1844474	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1844475	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28651361	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34360725	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34924415	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3732511	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3821414	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3901349	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3924228	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs41276471	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4521191	0.86[AMR][1000 genomes]
rs4574264	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55651418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55849986	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56031438	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56097266	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56152533	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6445822	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6445823	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6765444	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6767897	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6770654	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6773569	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776368	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6776992	0.98[ASN][1000 genomes]
rs6778753	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778984	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6778985	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6780940	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781979	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783263	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6787106	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6792623	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6793398	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6794215	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6804621	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6805864	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808707	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7427683	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7427684	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7431479	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7617179	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7627227	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7650042	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9311618	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311619	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs957849	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9754631	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9755927	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757026	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9810507	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9810658	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9816311	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9826255	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9826563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9835767	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845925	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855217	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9856297	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9864273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864804	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865146	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866237	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882705	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9883232	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56734800-56756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:56739400-56758600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:56742200-56753000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:56751600-56752400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:56751600-56752800	Enhancers	Dnd41	blood
6	chr3:56751800-56752200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:56751800-56752400	Enhancers	Primary T cells from cord blood	blood
8	chr3:56751800-56752400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:56751800-56752400	Enhancers	Fetal Thymus	thymus
10	chr3:56751800-56752600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:56751800-56752600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:56751800-56752600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:56751800-56752600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:56751800-56752800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:56752000-56756800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:56752000-56758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:56752000-56758800	Weak transcription	Thymus	Thymus

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