The 2.0 version of rSNPBase

Variant report

Variant rs6778985
Chromosome Location chr3:56756477-56756478
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56739400-56758600 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr3:56752000-56756800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr3:56752000-56758600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr3:56752000-56758800 Weak transcription Thymus Thymus
5 chr3:56752200-56757200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr3:56752400-56756600 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr3:56752400-56756600 Weak transcription Fetal Thymus thymus
8 chr3:56752400-56756800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr3:56752400-56757000 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr3:56752600-56757000 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr3:56752600-56758600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr3:56752600-56758600 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr3:56752800-56757000 Weak transcription Dnd41 blood
14 chr3:56753000-56758600 Weak transcription HSMM muscle
15 chr3:56753200-56758800 Weak transcription Fetal Muscle Leg muscle
16 chr3:56753200-56759400 Weak transcription Brain Anterior Caudate brain
17 chr3:56753400-56766200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr3:56753600-56757000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr3:56753600-56758000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr3:56753600-56759200 Weak transcription Fetal Stomach stomach
21 chr3:56753600-56763000 Weak transcription Brain Substantia Nigra brain
22 chr3:56753800-56758800 Weak transcription Primary hematopoietic stem cells blood
23 chr3:56753800-56760800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr3:56754200-56757200 Weak transcription Fetal Muscle Trunk muscle
25 chr3:56754200-56762200 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr3:56754400-56758800 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr3:56754400-56762400 Weak transcription Brain Germinal Matrix brain
28 chr3:56754400-56783200 Weak transcription Stomach Mucosa stomach
29 chr3:56754600-56756800 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr3:56754600-56758600 Weak transcription Fetal Brain Female brain
31 chr3:56754600-56758800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr3:56754800-56760600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr3:56755000-56756600 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr3:56755000-56762200 Weak transcription Colon Smooth Muscle Colon
35 chr3:56755200-56760800 Weak transcription HepG2 liver
36 chr3:56755200-56781800 Weak transcription NH-A brain
37 chr3:56755400-56756600 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr3:56755400-56758200 Strong transcription Primary T cells from cord blood blood
39 chr3:56755400-56759000 Weak transcription Adipose Nuclei Adipose
40 chr3:56755400-56759000 Weak transcription Left Ventricle heart
41 chr3:56755600-56758600 Weak transcription Lung lung
42 chr3:56755600-56758800 Weak transcription Primary B cells from peripheral blood blood
43 chr3:56755600-56758800 Weak transcription Fetal Heart heart
44 chr3:56755600-56760400 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr3:56755600-56762400 Weak transcription Rectal Smooth Muscle rectum
46 chr3:56755800-56757400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
47 chr3:56755800-56757600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
48 chr3:56755800-56758600 Weak transcription Fetal Kidney kidney
49 chr3:56755800-56758800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr3:56755800-56760600 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015