Variant report

Variant	rs1009119
Chromosome Location	chr3:56763228-56763229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ARHGEF3	hsa-miR-373-3p	chr3:56763209-56763231

Variant related genes	Relation type
ARHGEF3	miRNA target site

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1009118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919114	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919184	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061142	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095559	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13319627	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1489948	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1844474	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1844475	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28651361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34360725	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924415	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3732511	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3821414	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3901349	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3924228	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41276471	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4574264	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55651418	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55849986	0.92[ASN][1000 genomes]
rs56031438	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56152533	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6445822	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6445823	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6765444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767897	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6770654	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6773569	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6776368	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6776992	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6777946	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6778753	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6778984	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6778985	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6780940	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6781979	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6781995	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6783263	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6787106	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792623	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6793398	0.87[ASN][1000 genomes]
rs6794215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804621	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6805864	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6808707	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6978	1.00[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427683	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7427684	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7431479	0.88[JPT][hapmap]
rs7617179	0.98[ASN][1000 genomes]
rs7627227	0.98[ASN][1000 genomes]
rs7650042	0.98[ASN][1000 genomes]
rs9311618	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9311619	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs957849	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9754631	0.90[ASN][1000 genomes]
rs9755927	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9757026	0.96[ASN][1000 genomes]
rs9810507	0.94[ASN][1000 genomes]
rs9816311	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9826255	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9826362	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9826563	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9835767	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9845925	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9855217	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9864273	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9864804	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9865146	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9866237	0.98[ASN][1000 genomes]
rs9882705	0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9883232	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56753400-56766200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56754400-56783200	Weak transcription	Stomach Mucosa	stomach
3	chr3:56755200-56781800	Weak transcription	NH-A	brain
4	chr3:56756400-56767200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:56756600-56766200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:56756800-56781000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:56757000-56786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:56757200-56767200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr3:56757200-56767400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
11	chr3:56758000-56768600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:56758000-56768800	Weak transcription	NHDF-Ad	bronchial
13	chr3:56758600-56764200	Strong transcription	HMEC	breast
14	chr3:56758600-56766800	Strong transcription	HSMM	muscle
15	chr3:56758600-56767000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:56758600-56767000	Strong transcription	Lung	lung
17	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:56758800-56763600	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr3:56758800-56764800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:56758800-56766400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:56758800-56766800	Strong transcription	Fetal Muscle Leg	muscle
22	chr3:56758800-56767000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:56758800-56767000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:56758800-56767400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:56758800-56770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:56758800-56782800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr3:56759000-56764000	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:56759000-56764200	Strong transcription	Left Ventricle	heart
29	chr3:56759000-56766600	Strong transcription	Adipose Nuclei	Adipose
30	chr3:56759000-56774400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:56759200-56764400	Strong transcription	Brain Hippocampus Middle	brain
32	chr3:56759400-56765600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:56759400-56784000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:56759600-56765800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:56759600-56773200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:56759800-56767200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:56759800-56779000	Weak transcription	Liver	Liver
38	chr3:56759800-56790400	Strong transcription	Dnd41	blood
39	chr3:56760000-56767000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr3:56760000-56768600	Strong transcription	Thymus	Thymus
41	chr3:56760200-56763800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:56760400-56763600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr3:56760400-56766800	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:56760400-56773200	Strong transcription	Primary B cells from cord blood	blood
45	chr3:56760600-56766200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:56760600-56766800	Strong transcription	Placenta	Placenta
47	chr3:56760600-56768000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:56760600-56769400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr3:56760800-56763600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:56760800-56766400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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