Variant report

Variant	rs6445823
Chromosome Location	chr3:56777882-56777883
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1009118	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1009119	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11919114	0.94[ASN][1000 genomes]
rs11919130	0.94[ASN][1000 genomes]
rs11919184	0.94[ASN][1000 genomes]
rs13061142	0.94[ASN][1000 genomes]
rs13095559	0.95[ASN][1000 genomes]
rs13319627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1489948	0.92[ASN][1000 genomes]
rs1844474	0.94[ASN][1000 genomes]
rs1844475	0.90[ASN][1000 genomes]
rs28651361	0.95[ASN][1000 genomes]
rs34360725	0.94[ASN][1000 genomes]
rs34924415	0.98[ASN][1000 genomes]
rs3732511	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3821414	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3901349	0.93[ASN][1000 genomes]
rs3924228	0.93[ASN][1000 genomes]
rs41276471	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4521191	0.84[AMR][1000 genomes]
rs4574264	0.94[ASN][1000 genomes]
rs55651418	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55849986	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56031438	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56152533	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445822	0.94[ASN][1000 genomes]
rs6765444	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6767897	0.92[ASN][1000 genomes]
rs6770654	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6773569	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6776368	0.90[ASN][1000 genomes]
rs6776992	0.95[ASN][1000 genomes]
rs6777946	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6778753	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6778984	0.89[ASN][1000 genomes]
rs6778985	0.90[ASN][1000 genomes]
rs6780940	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6781979	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6781995	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6783263	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6787106	0.94[ASN][1000 genomes]
rs6792623	0.81[ASN][1000 genomes]
rs6793398	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6794215	0.94[ASN][1000 genomes]
rs6804621	0.95[ASN][1000 genomes]
rs6805864	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6808707	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6978	0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs7427683	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7427684	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7431479	1.00[CEU][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes]
rs7617179	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7627227	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7650042	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9311618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9311619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs957849	0.94[ASN][1000 genomes]
rs9754631	0.90[ASN][1000 genomes]
rs9755927	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9757026	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9810507	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9816311	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9826255	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9826362	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9826563	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9835767	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9845925	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9855217	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9864273	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9864804	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9865146	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9866237	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882705	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9883232	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56754400-56783200	Weak transcription	Stomach Mucosa	stomach
2	chr3:56755200-56781800	Weak transcription	NH-A	brain
3	chr3:56756800-56781000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:56757000-56786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
6	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:56758800-56782800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:56759400-56784000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:56759800-56779000	Weak transcription	Liver	Liver
10	chr3:56759800-56790400	Strong transcription	Dnd41	blood
11	chr3:56760800-56783000	Weak transcription	Osteobl	bone
12	chr3:56760800-56788800	Strong transcription	Fetal Thymus	thymus
13	chr3:56762000-56788400	Weak transcription	Colonic Mucosa	Colon
14	chr3:56763600-56781000	Weak transcription	Fetal Brain Male	brain
15	chr3:56763600-56784200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:56763800-56789000	Weak transcription	Small Intestine	intestine
17	chr3:56763800-56790200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:56763800-56792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:56764000-56783200	Weak transcription	HSMMtube	muscle
20	chr3:56764000-56783400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:56764000-56786600	Weak transcription	Aorta	Aorta
22	chr3:56764000-56788800	Weak transcription	Fetal Heart	heart
23	chr3:56764000-56789000	Weak transcription	Psoas Muscle	Psoas
24	chr3:56764000-56793400	Weak transcription	Gastric	stomach
25	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
26	chr3:56765200-56778200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:56766200-56788200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:56766600-56778800	Weak transcription	Brain Angular Gyrus	brain
29	chr3:56766600-56779000	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:56766600-56785800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:56766800-56778200	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:56766800-56779000	Weak transcription	Brain Substantia Nigra	brain
33	chr3:56766800-56782800	Weak transcription	Fetal Kidney	kidney
34	chr3:56766800-56782800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:56767400-56778200	Weak transcription	HUVEC	blood vessel
36	chr3:56767400-56783000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:56767400-56792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:56767600-56783000	Weak transcription	NHEK	skin
39	chr3:56768400-56779200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:56768400-56797600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:56769000-56785200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:56770400-56778000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:56770800-56778200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr3:56770800-56787200	Strong transcription	Primary T cells from cord blood	blood
45	chr3:56771200-56782200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:56771200-56782800	Weak transcription	Fetal Lung	lung
47	chr3:56771400-56778400	Weak transcription	Ovary	ovary
48	chr3:56773000-56779000	Weak transcription	HSMM	muscle
49	chr3:56773800-56781800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:56774400-56785000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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