Variant report

Variant	rs6793398
Chromosome Location	chr3:56771966-56771967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1009118	0.87[ASN][1000 genomes]
rs1009119	0.87[ASN][1000 genomes]
rs11919114	0.87[ASN][1000 genomes]
rs11919130	0.87[ASN][1000 genomes]
rs11919184	0.87[ASN][1000 genomes]
rs13061142	0.87[ASN][1000 genomes]
rs13095559	0.89[ASN][1000 genomes]
rs13319627	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1489948	0.86[ASN][1000 genomes]
rs1844474	0.87[ASN][1000 genomes]
rs1844475	0.83[ASN][1000 genomes]
rs28651361	0.89[ASN][1000 genomes]
rs34360725	0.87[ASN][1000 genomes]
rs34924415	0.91[ASN][1000 genomes]
rs3732511	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3821414	0.84[ASN][1000 genomes]
rs3901349	0.86[ASN][1000 genomes]
rs3924228	0.86[ASN][1000 genomes]
rs41276471	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4574264	0.87[ASN][1000 genomes]
rs55651418	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55849986	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56031438	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56152533	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6445822	0.87[ASN][1000 genomes]
rs6445823	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6765444	0.87[ASN][1000 genomes]
rs6767897	0.89[ASN][1000 genomes]
rs6770654	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6773569	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6776368	0.83[ASN][1000 genomes]
rs6776992	0.89[ASN][1000 genomes]
rs6777946	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6778753	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6778984	0.83[ASN][1000 genomes]
rs6778985	0.83[ASN][1000 genomes]
rs6780940	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6781979	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6781995	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6783263	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6787106	0.87[ASN][1000 genomes]
rs6794215	0.87[ASN][1000 genomes]
rs6804621	0.89[ASN][1000 genomes]
rs6805864	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6808707	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6978	0.87[ASN][1000 genomes]
rs7427683	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7427684	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7431479	0.97[EUR][1000 genomes]
rs7617179	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7627227	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7650042	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9311618	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9311619	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs957849	0.87[ASN][1000 genomes]
rs9754631	0.86[ASN][1000 genomes]
rs9755927	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9757026	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9810507	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9816311	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9826255	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9826362	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9826563	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9835767	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9845925	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9855217	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9864273	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9864804	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9865146	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9866237	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9882705	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9883232	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440152	chr3:56764403-56773941	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56754400-56783200	Weak transcription	Stomach Mucosa	stomach
2	chr3:56755200-56781800	Weak transcription	NH-A	brain
3	chr3:56756800-56781000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:56757000-56786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
6	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:56758800-56782800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:56759000-56774400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:56759400-56784000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:56759600-56773200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:56759800-56779000	Weak transcription	Liver	Liver
12	chr3:56759800-56790400	Strong transcription	Dnd41	blood
13	chr3:56760400-56773200	Strong transcription	Primary B cells from cord blood	blood
14	chr3:56760800-56773200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr3:56760800-56783000	Weak transcription	Osteobl	bone
16	chr3:56760800-56788800	Strong transcription	Fetal Thymus	thymus
17	chr3:56762000-56788400	Weak transcription	Colonic Mucosa	Colon
18	chr3:56763600-56781000	Weak transcription	Fetal Brain Male	brain
19	chr3:56763600-56784200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:56763800-56789000	Weak transcription	Small Intestine	intestine
21	chr3:56763800-56790200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:56763800-56792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:56764000-56783200	Weak transcription	HSMMtube	muscle
24	chr3:56764000-56783400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:56764000-56786600	Weak transcription	Aorta	Aorta
26	chr3:56764000-56788800	Weak transcription	Fetal Heart	heart
27	chr3:56764000-56789000	Weak transcription	Psoas Muscle	Psoas
28	chr3:56764000-56793400	Weak transcription	Gastric	stomach
29	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
30	chr3:56764200-56777200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:56765200-56778200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:56766200-56788200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:56766400-56776400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:56766400-56777400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:56766400-56777600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:56766400-56777800	Weak transcription	Fetal Brain Female	brain
37	chr3:56766600-56777200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:56766600-56778800	Weak transcription	Brain Angular Gyrus	brain
39	chr3:56766600-56779000	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:56766600-56785800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:56766800-56775800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:56766800-56777200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:56766800-56778200	Weak transcription	Brain Hippocampus Middle	brain
44	chr3:56766800-56779000	Weak transcription	Brain Substantia Nigra	brain
45	chr3:56766800-56782800	Weak transcription	Fetal Kidney	kidney
46	chr3:56766800-56782800	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr3:56767000-56773200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:56767400-56777000	Weak transcription	GM12878-XiMat	blood
49	chr3:56767400-56778200	Weak transcription	HUVEC	blood vessel
50	chr3:56767400-56783000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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