Variant report

Variant	rs7431479
Chromosome Location	chr3:56768374-56768375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1009118	0.88[JPT][hapmap];0.87[AFR][1000 genomes]
rs1009119	0.88[JPT][hapmap]
rs11919184	0.87[AFR][1000 genomes]
rs13095559	0.87[AFR][1000 genomes]
rs13319627	1.00[CEU][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes]
rs1489948	0.85[AFR][1000 genomes]
rs1844474	0.85[AFR][1000 genomes]
rs1844475	0.87[AFR][1000 genomes]
rs34360725	0.83[AFR][1000 genomes]
rs34924415	0.90[AFR][1000 genomes]
rs3732511	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3821414	0.88[JPT][hapmap];0.87[AFR][1000 genomes]
rs3901349	0.87[AFR][1000 genomes]
rs3924228	0.81[AFR][1000 genomes]
rs41276471	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4574264	0.87[AFR][1000 genomes]
rs55651418	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55849986	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56031438	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs56152533	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6445822	0.87[AFR][1000 genomes]
rs6445823	1.00[CEU][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes]
rs6765444	0.88[JPT][hapmap];0.87[AFR][1000 genomes]
rs6767897	0.87[AFR][1000 genomes]
rs6773569	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6777946	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6778753	0.91[EUR][1000 genomes]
rs6778985	0.87[AFR][1000 genomes]
rs6780940	0.91[EUR][1000 genomes]
rs6781979	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6781995	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6783263	0.80[AFR][1000 genomes]
rs6787106	0.87[AFR][1000 genomes]
rs6793398	0.97[EUR][1000 genomes]
rs6804621	0.87[AFR][1000 genomes]
rs6805864	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6808707	0.91[EUR][1000 genomes]
rs6978	0.82[JPT][hapmap]
rs7427683	0.98[EUR][1000 genomes]
rs7427684	0.87[CEU][hapmap];0.98[EUR][1000 genomes]
rs7617179	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7627227	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7650042	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9311618	1.00[CEU][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes]
rs9311619	1.00[CEU][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes]
rs9755927	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9757026	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9810507	0.92[EUR][1000 genomes]
rs9814014	0.82[CHB][hapmap]
rs9816311	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9826255	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9826362	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9826563	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9835767	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9845925	0.91[EUR][1000 genomes]
rs9855217	0.98[EUR][1000 genomes]
rs9864273	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9864804	0.90[EUR][1000 genomes]
rs9865146	0.90[EUR][1000 genomes]
rs9866237	0.92[EUR][1000 genomes]
rs9882705	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9883232	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440152	chr3:56764403-56773941	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56754400-56783200	Weak transcription	Stomach Mucosa	stomach
2	chr3:56755200-56781800	Weak transcription	NH-A	brain
3	chr3:56756800-56781000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:56757000-56786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
6	chr3:56758000-56768600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:56758000-56768800	Weak transcription	NHDF-Ad	bronchial
8	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:56758800-56770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:56758800-56782800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr3:56759000-56774400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:56759400-56784000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:56759600-56773200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:56759800-56779000	Weak transcription	Liver	Liver
15	chr3:56759800-56790400	Strong transcription	Dnd41	blood
16	chr3:56760000-56768600	Strong transcription	Thymus	Thymus
17	chr3:56760400-56773200	Strong transcription	Primary B cells from cord blood	blood
18	chr3:56760600-56769400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:56760800-56773200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:56760800-56783000	Weak transcription	Osteobl	bone
21	chr3:56760800-56788800	Strong transcription	Fetal Thymus	thymus
22	chr3:56762000-56788400	Weak transcription	Colonic Mucosa	Colon
23	chr3:56762200-56768800	Strong transcription	Primary T cells from cord blood	blood
24	chr3:56763000-56768400	Strong transcription	Brain Cingulate Gyrus	brain
25	chr3:56763600-56781000	Weak transcription	Fetal Brain Male	brain
26	chr3:56763600-56784200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:56763800-56771000	Weak transcription	Fetal Lung	lung
28	chr3:56763800-56789000	Weak transcription	Small Intestine	intestine
29	chr3:56763800-56790200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:56763800-56792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:56764000-56770200	Weak transcription	Brain Germinal Matrix	brain
32	chr3:56764000-56770800	Weak transcription	Ovary	ovary
33	chr3:56764000-56770800	Weak transcription	Right Ventricle	heart
34	chr3:56764000-56771000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:56764000-56783200	Weak transcription	HSMMtube	muscle
36	chr3:56764000-56783400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:56764000-56786600	Weak transcription	Aorta	Aorta
38	chr3:56764000-56788800	Weak transcription	Fetal Heart	heart
39	chr3:56764000-56789000	Weak transcription	Psoas Muscle	Psoas
40	chr3:56764000-56793400	Weak transcription	Gastric	stomach
41	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
42	chr3:56764200-56777200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:56764600-56770000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:56765200-56778200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr3:56765400-56769400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:56766200-56771400	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr3:56766200-56788200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr3:56766400-56770200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:56766400-56770400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:56766400-56770800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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