Variant report

Variant	rs560981
Chromosome Location	chr7:140786681-140786682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11762357	0.92[ASN][1000 genomes]
rs1860752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2365575	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4726263	0.94[ASN][1000 genomes]
rs491554	0.94[ASN][1000 genomes]
rs498933	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs511001	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs534348	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs536809	0.91[ASN][1000 genomes]
rs553046	0.94[ASN][1000 genomes]
rs55949610	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464278	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs6464330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6944492	0.94[ASN][1000 genomes]
rs6960603	0.89[ASN][1000 genomes]
rs6962233	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs722219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7778658	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7805034	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7806026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810146	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs801157	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs801158	0.94[ASN][1000 genomes]
rs9640323	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140778000-140793200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:140778800-140794400	Weak transcription	Fetal Brain Female	brain
3	chr7:140783400-140787800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:140783400-140790600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:140783400-140793200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:140783400-140794400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:140783400-140800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:140783400-140801400	Weak transcription	Fetal Brain Male	brain

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