Variant report

Variant	rs9640323
Chromosome Location	chr7:140795298-140795299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140791037..140792664-chr7:140793260..140795969,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11762357	0.92[ASN][1000 genomes]
rs1860752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2365575	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4726263	0.94[ASN][1000 genomes]
rs491554	0.94[ASN][1000 genomes]
rs498933	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs511001	0.94[ASN][1000 genomes]
rs534348	0.94[ASN][1000 genomes]
rs536809	0.91[ASN][1000 genomes]
rs553046	0.94[ASN][1000 genomes]
rs55949610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560981	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464278	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6464330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6944492	0.94[ASN][1000 genomes]
rs6960603	0.89[ASN][1000 genomes]
rs6962233	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs722219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7778658	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7805034	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810146	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs801157	0.94[ASN][1000 genomes]
rs801158	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140783400-140800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:140783400-140801400	Weak transcription	Fetal Brain Male	brain
3	chr7:140793000-140796000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:140793200-140795600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:140793200-140795800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:140793200-140796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:140793400-140796000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:140794200-140795800	Enhancers	Brain Substantia Nigra	brain
9	chr7:140794400-140796200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:140794400-140801200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:140794400-140801400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:140794600-140795400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:140794600-140795600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:140794600-140795800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr7:140794800-140795600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:140794800-140795800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:140794800-140795800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:140795000-140801600	Weak transcription	Fetal Brain Female	brain

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