Variant report

Variant	rs560988
Chromosome Location	chr11:74033815-74033816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPME1-1	chr11:74033752-74035048	ENSG00000246211

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10488770	1.00[CEU][hapmap]
rs10501413	1.00[CEU][hapmap]
rs10501414	1.00[CEU][hapmap]
rs11236050	1.00[EUR][1000 genomes]
rs11236051	1.00[EUR][1000 genomes]
rs11823967	1.00[CEU][hapmap]
rs17132796	1.00[CEU][hapmap]
rs17132801	1.00[CEU][hapmap]
rs17132816	1.00[CEU][hapmap]
rs17132818	1.00[CEU][hapmap]
rs17132826	1.00[CEU][hapmap]
rs17132836	1.00[CEU][hapmap]
rs17132837	1.00[CEU][hapmap]
rs17132855	1.00[CEU][hapmap]
rs17132864	1.00[CEU][hapmap]
rs17132870	1.00[CEU][hapmap]
rs17132881	1.00[CEU][hapmap]
rs17132882	1.00[CEU][hapmap]
rs17160052	1.00[CEU][hapmap]
rs2509527	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3897548	1.00[CEU][hapmap]
rs4489773	1.00[CEU][hapmap]
rs4575301	1.00[CEU][hapmap]
rs518268	1.00[EUR][1000 genomes]
rs520523	1.00[CEU][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs528900	1.00[CEU][hapmap]
rs531902	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs560814	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs600145	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs617184	1.00[EUR][1000 genomes]
rs640907	1.00[EUR][1000 genomes]
rs644421	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs655333	1.00[EUR][1000 genomes]
rs6592549	1.00[CEU][hapmap]
rs6592550	1.00[CEU][hapmap]
rs670974	1.00[CEU][hapmap];0.80[MKK][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106817	1.00[CEU][hapmap]
rs7110062	1.00[CEU][hapmap]
rs7113898	1.00[CEU][hapmap]
rs7127358	1.00[CEU][hapmap]
rs7129659	1.00[CEU][hapmap]
rs7129774	1.00[CEU][hapmap]
rs7924965	1.00[CEU][hapmap]
rs7925320	1.00[CEU][hapmap]
rs7925695	1.00[CEU][hapmap]
rs7926891	1.00[CEU][hapmap]
rs7931935	1.00[CEU][hapmap]
rs7947458	1.00[CEU][hapmap]
rs947840	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv555425	chr11:74025055-74034473	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv555429	chr11:74025279-74034473	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74023200-74036800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:74028800-74038800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:74029000-74034400	Enhancers	HUVEC	blood vessel
4	chr11:74030200-74034400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:74030200-74035400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:74030800-74036600	Weak transcription	HSMM	muscle
7	chr11:74030800-74037200	Weak transcription	Aorta	Aorta
8	chr11:74031200-74036200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:74031200-74071200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:74031400-74034400	Enhancers	Osteobl	bone
11	chr11:74031400-74034600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:74031600-74034600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:74031800-74034000	Enhancers	Fetal Brain Male	brain
14	chr11:74032000-74034600	Enhancers	Psoas Muscle	Psoas
15	chr11:74032200-74034000	Enhancers	NHLF	lung
16	chr11:74032400-74034000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:74032600-74034000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:74032600-74034000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:74032600-74034200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:74032600-74034200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:74032600-74034200	Enhancers	Fetal Lung	lung
22	chr11:74032600-74034400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:74032800-74034000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:74032800-74034000	Enhancers	Fetal Muscle Leg	muscle
25	chr11:74032800-74034200	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:74032800-74034200	Enhancers	NH-A	brain
27	chr11:74032800-74034400	Enhancers	HSMMtube	muscle
28	chr11:74032800-74034600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:74032800-74034800	Enhancers	Adipose Nuclei	Adipose
30	chr11:74032800-74034800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:74033000-74034000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr11:74033000-74034000	Enhancers	Rectal Smooth Muscle	rectum
33	chr11:74033000-74036600	Weak transcription	Pancreas	Pancrea
34	chr11:74033000-74037000	Weak transcription	Right Ventricle	heart
35	chr11:74033000-74037000	Weak transcription	A549	lung
36	chr11:74033200-74034200	Enhancers	Colon Smooth Muscle	Colon
37	chr11:74033200-74036600	Weak transcription	Left Ventricle	heart
38	chr11:74033200-74047200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:74033400-74034000	Enhancers	Fetal Brain Female	brain
40	chr11:74033400-74034400	Enhancers	NHDF-Ad	bronchial
41	chr11:74033400-74036400	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:74033600-74034000	Enhancers	Ovary	ovary
43	chr11:74033600-74040600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:74033800-74034000	Enhancers	Fetal Muscle Trunk	muscle
45	chr11:74033800-74034200	Enhancers	Lung	lung

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