Variant report

Variant	rs17132881
Chromosome Location	chr11:73965138-73965139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:73965098-73965305	A549	lung:	n/a	n/a
2	POLR2A	chr11:73963369-73969941	A549	lung:	n/a	n/a
3	POLR2A	chr11:73965083-73965302	K562	blood:	n/a	n/a
4	POLR2A	chr11:73965138-73965155	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr11:73965075-73965204	K562	blood:	n/a	n/a
6	POLR2A	chr11:73964981-73965276	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000206913	TF binding region

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10488770	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10488771	1.00[JPT][hapmap]
rs10501413	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs10501414	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11823967	1.00[CEU][hapmap]
rs12421228	1.00[JPT][hapmap]
rs17132721	1.00[JPT][hapmap]
rs17132796	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17132801	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132816	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132818	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132826	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132836	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132837	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17132846	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132855	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132864	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132870	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17132873	0.83[AMR][1000 genomes]
rs17132882	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17132891	1.00[JPT][hapmap]
rs17132911	1.00[JPT][hapmap]
rs17132914	1.00[JPT][hapmap]
rs17132921	1.00[JPT][hapmap]
rs17132931	1.00[JPT][hapmap]
rs17132947	1.00[JPT][hapmap]
rs17132991	1.00[JPT][hapmap]
rs17133043	1.00[JPT][hapmap]
rs17160052	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1790393	1.00[JPT][hapmap]
rs2154971	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2186561	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34895949	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3897548	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4121666	1.00[JPT][hapmap]
rs41349744	1.00[JPT][hapmap]
rs4489773	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4575301	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs512641	1.00[JPT][hapmap]
rs520523	1.00[CEU][hapmap]
rs528900	1.00[CEU][hapmap]
rs531902	1.00[CEU][hapmap]
rs560814	1.00[CEU][hapmap]
rs56142225	0.94[AFR][1000 genomes]
rs56171120	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56343229	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56984031	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57115412	0.88[EUR][1000 genomes]
rs58102808	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58421256	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs600145	1.00[CEU][hapmap]
rs60044681	0.88[EUR][1000 genomes]
rs60206858	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60218608	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs60219367	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60981452	0.95[AFR][1000 genomes]
rs61132076	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs644421	1.00[CEU][hapmap]
rs6592549	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6592550	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs670974	1.00[CEU][hapmap]
rs7106817	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7107268	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7110062	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7113898	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7117866	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7126696	0.88[EUR][1000 genomes]
rs7127358	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7129659	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7129774	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs73549014	0.94[AFR][1000 genomes]
rs73549059	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73561882	0.82[EUR][1000 genomes]
rs73565826	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73565828	0.94[AFR][1000 genomes]
rs73565829	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73565839	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73565840	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73565842	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7924965	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7925320	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7925695	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7926891	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7947458	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs826048	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs947840	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73907400-73969200	Weak transcription	HUVEC	blood vessel
2	chr11:73936000-73968000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:73936200-73966600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:73936400-73967000	Strong transcription	HSMM	muscle
5	chr11:73936400-73967600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:73938800-73967400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:73941000-73967600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:73941000-73967800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:73945600-73966800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:73946600-73966600	Strong transcription	A549	lung
11	chr11:73950400-73966600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:73952000-73966800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:73955000-73965400	Strong transcription	Hela-S3	cervix
14	chr11:73955000-73967600	Strong transcription	Fetal Thymus	thymus
15	chr11:73955800-73966600	Strong transcription	Placenta	Placenta
16	chr11:73955800-73968800	Weak transcription	Stomach Mucosa	stomach
17	chr11:73956000-73967200	Strong transcription	HepG2	liver
18	chr11:73956600-73966200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr11:73956600-73966200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:73956800-73966000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:73956800-73966200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:73956800-73966200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:73956800-73966400	Strong transcription	Osteobl	bone
24	chr11:73956800-73966600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:73956800-73966600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:73956800-73966800	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:73956800-73967800	Strong transcription	Adipose Nuclei	Adipose
28	chr11:73957000-73965800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:73957000-73965800	Strong transcription	Duodenum Mucosa	Duodenum
30	chr11:73957000-73966000	Strong transcription	Ovary	ovary
31	chr11:73957000-73966200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:73957000-73966200	Strong transcription	Fetal Intestine Large	intestine
33	chr11:73957000-73966400	Strong transcription	Primary T cells from cord blood	blood
34	chr11:73957000-73966400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:73957000-73966400	Strong transcription	Brain Germinal Matrix	brain
36	chr11:73957000-73966400	Strong transcription	Left Ventricle	heart
37	chr11:73957000-73966400	Strong transcription	Dnd41	blood
38	chr11:73957000-73966400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr11:73957000-73966600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:73957000-73966600	Strong transcription	Brain Anterior Caudate	brain
41	chr11:73957000-73966800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:73957000-73966800	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr11:73957000-73967400	Strong transcription	HSMMtube	muscle
44	chr11:73957000-73967800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:73957000-73967800	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:73957000-73967800	Strong transcription	Fetal Stomach	stomach
47	chr11:73957000-73968000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr11:73957000-73968200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:73957200-73966000	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:73957200-73966200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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