Variant report

Variant	rs10488771
Chromosome Location	chr11:73994285-73994286
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73994107..73996147-chr11:74030507..74033289,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10488770	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10501413	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10501414	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12277116	0.86[ASN][1000 genomes]
rs12277407	0.86[ASN][1000 genomes]
rs12291090	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295243	0.86[ASN][1000 genomes]
rs12421228	1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12794753	1.00[ASN][1000 genomes]
rs17132721	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132796	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132801	1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132816	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132818	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132826	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132836	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132837	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132846	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132855	1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132864	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132870	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132881	1.00[JPT][hapmap]
rs17132882	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132891	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132911	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132914	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132921	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132931	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132947	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132965	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132991	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs17133043	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17160052	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1790392	0.86[ASN][1000 genomes]
rs1790393	0.86[ASN][1000 genomes]
rs2154971	1.00[ASN][1000 genomes]
rs2186561	1.00[ASN][1000 genomes]
rs34895949	1.00[ASN][1000 genomes]
rs3897548	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4121666	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41349744	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4489773	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4575301	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs512641	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs55814391	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142225	1.00[ASN][1000 genomes]
rs56171120	1.00[ASN][1000 genomes]
rs56295430	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56343229	1.00[ASN][1000 genomes]
rs56808069	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56984031	1.00[ASN][1000 genomes]
rs57115412	1.00[ASN][1000 genomes]
rs57384187	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57393325	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57642592	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102808	1.00[ASN][1000 genomes]
rs58421256	1.00[ASN][1000 genomes]
rs58898896	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60044681	1.00[ASN][1000 genomes]
rs60155023	0.92[EUR][1000 genomes]
rs60206858	1.00[ASN][1000 genomes]
rs60218608	1.00[ASN][1000 genomes]
rs60219367	1.00[ASN][1000 genomes]
rs60981452	1.00[ASN][1000 genomes]
rs61132076	1.00[ASN][1000 genomes]
rs6592549	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6592550	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7106817	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7107268	1.00[ASN][1000 genomes]
rs7110062	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7113898	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7126696	1.00[ASN][1000 genomes]
rs7127358	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129659	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129774	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73549014	1.00[ASN][1000 genomes]
rs73549059	1.00[ASN][1000 genomes]
rs73549071	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550730	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550769	0.86[ASN][1000 genomes]
rs73550772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73561882	1.00[ASN][1000 genomes]
rs73561885	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565826	1.00[ASN][1000 genomes]
rs73565828	1.00[ASN][1000 genomes]
rs73565829	1.00[ASN][1000 genomes]
rs73565839	1.00[ASN][1000 genomes]
rs73565840	1.00[ASN][1000 genomes]
rs73565842	1.00[ASN][1000 genomes]
rs7924965	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7925320	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7925695	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7926891	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7943916	1.00[ASN][1000 genomes]
rs7947458	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs826048	0.86[ASN][1000 genomes]
rs826059	0.86[ASN][1000 genomes]
rs826068	0.86[ASN][1000 genomes]
rs826069	0.86[ASN][1000 genomes]
rs947840	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73990400-73998800	Weak transcription	HUVEC	blood vessel
2	chr11:73990600-73994600	Weak transcription	Pancreas	Pancrea
3	chr11:73990600-73998800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:73990600-73999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:73990600-73999400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:73991000-73994400	Weak transcription	Osteobl	bone
7	chr11:73991000-73998800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:73991200-73995200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:73992000-73994800	Weak transcription	Hela-S3	cervix
10	chr11:73992000-73994800	Weak transcription	NH-A	brain
11	chr11:73992000-73999200	Weak transcription	Aorta	Aorta
12	chr11:73993000-73994600	Genic enhancers	A549	lung
13	chr11:73993000-73996000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:73993400-73995400	Enhancers	Lung	lung
15	chr11:73993400-73996000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:73993400-73996000	Enhancers	NHLF	lung
17	chr11:73993600-73994400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr11:73993600-73995600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:73993600-73996000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:73993800-73994400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr11:73994000-73994600	Enhancers	Primary T cells from cord blood	blood
22	chr11:73994000-73994800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:73994000-73994800	Enhancers	Brain Germinal Matrix	brain
24	chr11:73994000-73996000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:73994000-73996000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:73994000-73996000	Enhancers	NHDF-Ad	bronchial
27	chr11:73994200-73994800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr11:73994200-73995200	Enhancers	Colon Smooth Muscle	Colon
29	chr11:73994200-73996000	Enhancers	HSMM	muscle

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