Variant report

Variant	rs17132721
Chromosome Location	chr11:73820258-73820259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73677358..73679937-chr11:73818176..73820385,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UCP3-8	chr11:73820079-73820537	NONHSAT022879

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10488770	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10488771	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501413	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10501414	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1055178	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235979	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235981	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235982	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12277116	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12277407	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12291090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295243	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12421228	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12794753	1.00[ASN][1000 genomes]
rs17132602	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132610	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132620	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132629	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132796	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132801	1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17132816	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132818	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132826	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132836	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132837	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132846	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132855	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132864	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132870	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132881	1.00[JPT][hapmap]
rs17132882	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132891	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132911	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132914	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132921	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132931	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132947	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160052	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1790392	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1790393	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2154971	1.00[ASN][1000 genomes]
rs2186561	1.00[ASN][1000 genomes]
rs2272321	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34895949	1.00[ASN][1000 genomes]
rs3897548	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4121666	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41349744	1.00[ASN][1000 genomes]
rs4489773	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4575301	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55793503	0.86[ASN][1000 genomes]
rs55814391	1.00[ASN][1000 genomes]
rs56142225	1.00[ASN][1000 genomes]
rs56171120	1.00[ASN][1000 genomes]
rs56295430	0.86[ASN][1000 genomes]
rs56343229	1.00[ASN][1000 genomes]
rs56808069	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56984031	1.00[ASN][1000 genomes]
rs57115412	1.00[ASN][1000 genomes]
rs57384187	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57393325	1.00[ASN][1000 genomes]
rs57642592	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58102808	1.00[ASN][1000 genomes]
rs58421256	1.00[ASN][1000 genomes]
rs58727177	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58898896	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60044681	1.00[ASN][1000 genomes]
rs60206858	1.00[ASN][1000 genomes]
rs60218608	1.00[ASN][1000 genomes]
rs60219367	1.00[ASN][1000 genomes]
rs60636561	0.86[ASN][1000 genomes]
rs60759798	0.86[ASN][1000 genomes]
rs60981452	1.00[ASN][1000 genomes]
rs61132076	1.00[ASN][1000 genomes]
rs6592549	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6592550	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7106817	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7107268	1.00[ASN][1000 genomes]
rs7110062	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7113898	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7120494	1.00[JPT][hapmap]
rs7126696	1.00[ASN][1000 genomes]
rs7127358	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129659	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129774	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7130095	0.83[YRI][hapmap]
rs73549014	1.00[ASN][1000 genomes]
rs73549059	1.00[ASN][1000 genomes]
rs73549071	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550730	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550751	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550754	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550755	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550761	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550769	0.86[ASN][1000 genomes]
rs73550772	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555974	0.86[ASN][1000 genomes]
rs73555986	0.86[ASN][1000 genomes]
rs73557906	0.86[ASN][1000 genomes]
rs73561882	1.00[ASN][1000 genomes]
rs73561885	1.00[ASN][1000 genomes]
rs73565826	1.00[ASN][1000 genomes]
rs73565828	1.00[ASN][1000 genomes]
rs73565829	1.00[ASN][1000 genomes]
rs73565839	1.00[ASN][1000 genomes]
rs73565840	1.00[ASN][1000 genomes]
rs73565842	1.00[ASN][1000 genomes]
rs7924965	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7925320	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7925695	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7926891	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7943916	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947458	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs826048	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826059	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs826068	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs826069	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs826071	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826072	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826073	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826075	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826085	0.86[ASN][1000 genomes]
rs947840	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
2	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73794600-73823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73795200-73820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:73795200-73823800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:73801600-73823600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:73802000-73831800	Weak transcription	Pancreas	Pancrea
9	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
10	chr11:73802400-73832000	Weak transcription	Fetal Heart	heart
11	chr11:73804000-73832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
13	chr11:73805000-73823600	Weak transcription	Colonic Mucosa	Colon
14	chr11:73808800-73823600	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:73809800-73844400	Weak transcription	HMEC	breast
16	chr11:73809800-73847200	Weak transcription	HepG2	liver
17	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:73812800-73820400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:73814600-73823800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
21	chr11:73814800-73823800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:73814800-73824800	Weak transcription	Fetal Brain Male	brain
23	chr11:73815000-73823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:73815000-73824800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:73815400-73834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:73816200-73822400	Strong transcription	HSMMtube	muscle
27	chr11:73816400-73820400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:73816800-73840000	Weak transcription	Fetal Intestine Small	intestine
29	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:73817000-73823000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:73817200-73823600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
33	chr11:73817400-73821800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:73817400-73823600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:73817400-73823600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:73817400-73823600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:73817400-73823600	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:73817400-73823600	Weak transcription	Fetal Brain Female	brain
39	chr11:73817400-73823600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:73817400-73823800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:73817400-73823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:73817400-73823800	Weak transcription	Ovary	ovary
43	chr11:73817400-73823800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:73817400-73823800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:73817400-73823800	Weak transcription	K562	blood
46	chr11:73817400-73824000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:73817400-73824000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:73817400-73826800	Weak transcription	Small Intestine	intestine
49	chr11:73817400-73828600	Weak transcription	Right Ventricle	heart
50	chr11:73817400-73845400	Weak transcription	NHDF-Ad	bronchial

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