Variant report

Variant	rs7120494
Chromosome Location	chr11:73740164-73740165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73692646..73695519-chr11:73738092..73741151,3	MCF-7	breast:
2	chr11:73739984..73742799-chr11:73744371..73746997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10219224	1.00[CEU][hapmap]
rs10488770	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10501413	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10501414	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1055178	0.87[ASN][1000 genomes]
rs10898954	0.87[YRI][hapmap]
rs1095427	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1103886	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11235973	1.00[CEU][hapmap]
rs11235979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235981	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235982	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235989	1.00[AMR][1000 genomes]
rs11825062	1.00[AMR][1000 genomes]
rs12277116	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12277407	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12277532	0.88[AMR][1000 genomes]
rs12286033	1.00[CEU][hapmap]
rs12295243	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1685340	1.00[CEU][hapmap]
rs17132567	1.00[CEU][hapmap]
rs17132602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17132629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17132632	1.00[CEU][hapmap]
rs17132721	1.00[JPT][hapmap]
rs17132796	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132801	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132816	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132818	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132826	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132836	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132837	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132846	1.00[JPT][hapmap]
rs1726759	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790392	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1790393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2272321	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4453265	0.86[YRI][hapmap]
rs4575301	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs55793503	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58727177	0.87[ASN][1000 genomes]
rs60636561	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60759798	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592545	0.86[YRI][hapmap]
rs6592549	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7106817	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7110062	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7113898	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7117091	0.82[AMR][1000 genomes]
rs7126381	1.00[CEU][hapmap]
rs7127358	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7129659	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7129774	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs73552741	0.94[AMR][1000 genomes]
rs73552745	0.82[AMR][1000 genomes]
rs73555974	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73555986	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73557906	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73561882	0.80[EUR][1000 genomes]
rs7925320	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7925695	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7926891	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7947458	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs826042	1.00[AMR][1000 genomes]
rs826048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826051	1.00[AMR][1000 genomes]
rs826059	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826068	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826069	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826079	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs826081	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs826082	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs826085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826087	1.00[AMR][1000 genomes]
rs826089	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
13	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:73730600-73741400	Weak transcription	Hela-S3	cervix
16	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
20	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus
21	chr11:73731200-73743800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:73731200-73744800	Weak transcription	HepG2	liver
23	chr11:73731400-73741400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:73731400-73741400	Weak transcription	Gastric	stomach
25	chr11:73731400-73743800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:73731400-73744000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
29	chr11:73732200-73741600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:73732200-73744000	Weak transcription	Colonic Mucosa	Colon
31	chr11:73732600-73741400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:73734000-73741400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:73734000-73743000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:73734400-73743600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:73735600-73742400	Weak transcription	Liver	Liver
37	chr11:73735800-73745400	Strong transcription	Fetal Stomach	stomach
38	chr11:73736000-73742400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:73736200-73741400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:73736200-73743200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:73736200-73743400	Weak transcription	Brain Substantia Nigra	brain
42	chr11:73736200-73744200	Weak transcription	Stomach Mucosa	stomach
43	chr11:73736200-73744200	Weak transcription	K562	blood
44	chr11:73736200-73751200	Strong transcription	Fetal Thymus	thymus
45	chr11:73736400-73741800	Weak transcription	Adipose Nuclei	Adipose
46	chr11:73736800-73747800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:73737000-73741400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:73737000-73741600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:73737000-73742000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:73737000-73745400	Strong transcription	Fetal Intestine Small	intestine

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