Variant report

Variant	rs1726759
Chromosome Location	chr11:73735224-73735225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73690449..73693120-chr11:73733274..73735614,2	K562	blood:
2	chr11:73693982..73695727-chr11:73733677..73735276,2	MCF-7	breast:
3	chr11:73724598..73727385-chr11:73734984..73736826,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10219224	1.00[CEU][hapmap]
rs10501413	1.00[CEU][hapmap]
rs10501414	1.00[CEU][hapmap]
rs10898954	0.87[YRI][hapmap]
rs1095427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1103886	0.89[AMR][1000 genomes]
rs11235973	1.00[CEU][hapmap]
rs11235982	1.00[AMR][1000 genomes]
rs11235989	1.00[AMR][1000 genomes]
rs11825062	1.00[AMR][1000 genomes]
rs12277532	0.88[AMR][1000 genomes]
rs12286033	1.00[CEU][hapmap]
rs1685340	1.00[CEU][hapmap]
rs17132567	1.00[CEU][hapmap]
rs17132610	1.00[CEU][hapmap]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap]
rs17132629	1.00[CEU][hapmap]
rs17132632	1.00[CEU][hapmap]
rs17132796	1.00[CEU][hapmap]
rs17132801	1.00[CEU][hapmap]
rs17132816	1.00[CEU][hapmap]
rs17132818	1.00[CEU][hapmap]
rs17132826	1.00[CEU][hapmap]
rs17132836	1.00[CEU][hapmap]
rs17132837	1.00[CEU][hapmap]
rs4453265	0.86[YRI][hapmap]
rs4575301	1.00[CEU][hapmap]
rs6592545	0.86[YRI][hapmap]
rs6592549	1.00[CEU][hapmap]
rs7106817	1.00[CEU][hapmap]
rs7110062	1.00[CEU][hapmap]
rs7113898	1.00[CEU][hapmap]
rs7117091	0.82[AMR][1000 genomes]
rs7120494	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126381	1.00[CEU][hapmap]
rs7127358	1.00[CEU][hapmap]
rs7129659	1.00[CEU][hapmap]
rs7129774	1.00[CEU][hapmap]
rs73552741	0.94[AMR][1000 genomes]
rs73552745	0.82[AMR][1000 genomes]
rs7925320	1.00[CEU][hapmap]
rs7925695	1.00[CEU][hapmap]
rs7926891	1.00[CEU][hapmap]
rs7947458	1.00[CEU][hapmap]
rs826042	1.00[AMR][1000 genomes]
rs826048	1.00[CEU][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826051	1.00[AMR][1000 genomes]
rs826071	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826072	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826073	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826075	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826079	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs826081	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs826082	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs826085	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826087	1.00[AMR][1000 genomes]
rs826089	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv976527	chr11:73728292-73738902	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725200-73736400	Weak transcription	NHEK	skin
12	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
14	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73728400-73738400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:73728600-73738600	Weak transcription	Dnd41	blood
17	chr11:73728800-73736800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:73729200-73736600	Weak transcription	A549	lung
20	chr11:73729200-73740000	Weak transcription	Fetal Lung	lung
21	chr11:73730400-73737800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:73730400-73738400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:73730600-73735800	Weak transcription	NHDF-Ad	bronchial
24	chr11:73730600-73736200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:73730600-73741400	Weak transcription	Hela-S3	cervix
26	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:73730800-73735600	Weak transcription	K562	blood
28	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
31	chr11:73731000-73735800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus
33	chr11:73731200-73735400	Weak transcription	NHLF	lung
34	chr11:73731200-73736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:73731200-73736800	Weak transcription	Ovary	ovary
36	chr11:73731200-73743800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:73731200-73744800	Weak transcription	HepG2	liver
38	chr11:73731400-73735600	Weak transcription	Osteobl	bone
39	chr11:73731400-73735800	Weak transcription	Brain Substantia Nigra	brain
40	chr11:73731400-73735800	Weak transcription	NH-A	brain
41	chr11:73731400-73736400	Weak transcription	Thymus	Thymus
42	chr11:73731400-73736800	Weak transcription	Lung	lung
43	chr11:73731400-73739000	Weak transcription	Pancreas	Pancrea
44	chr11:73731400-73741400	Weak transcription	Brain Angular Gyrus	brain
45	chr11:73731400-73741400	Weak transcription	Gastric	stomach
46	chr11:73731400-73743800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:73731400-73744000	Weak transcription	Colon Smooth Muscle	Colon
48	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:73731600-73735400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:73731600-73735400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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