Variant report

Variant	rs17132620
Chromosome Location	chr11:73748179-73748180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73692189..73695942-chr11:73745919..73749708,6	MCF-7	breast:
2	chr11:73747380..73750127-chr11:73750655..73754891,4	K562	blood:
3	chr11:73747729..73749562-chr11:73778913..73781744,2	MCF-7	breast:
4	chr11:73675050..73677833-chr11:73747384..73749532,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction
ENSG00000255847	Chromatin interaction
ENSG00000168014	Chromatin interaction
ENSG00000187726	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10219224	1.00[CEU][hapmap]
rs10488770	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10501413	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10501414	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1055178	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1095422	0.85[AMR][1000 genomes]
rs1095427	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1103886	0.86[EUR][1000 genomes]
rs11235973	1.00[CEU][hapmap]
rs11235979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235981	1.00[ASN][1000 genomes]
rs11235982	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12277116	1.00[ASN][1000 genomes]
rs12277407	1.00[ASN][1000 genomes]
rs12286033	1.00[CEU][hapmap]
rs12291090	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12295243	1.00[ASN][1000 genomes]
rs12794753	0.86[ASN][1000 genomes]
rs1685340	1.00[CEU][hapmap]
rs17132567	1.00[CEU][hapmap]
rs17132602	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17132617	1.00[CEU][hapmap]
rs17132629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132632	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs17132641	1.00[AMR][1000 genomes]
rs17132721	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132796	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132801	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132818	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132826	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132846	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132864	0.86[ASN][1000 genomes]
rs17132870	0.86[ASN][1000 genomes]
rs17132882	0.86[ASN][1000 genomes]
rs17160052	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1726759	1.00[CEU][hapmap]
rs1790392	1.00[ASN][1000 genomes]
rs1790393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2154971	0.86[ASN][1000 genomes]
rs2186561	0.86[ASN][1000 genomes]
rs2272321	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34895949	0.86[ASN][1000 genomes]
rs3897548	0.86[ASN][1000 genomes]
rs4489773	0.86[ASN][1000 genomes]
rs4575301	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55793503	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814391	0.86[ASN][1000 genomes]
rs55870513	1.00[AMR][1000 genomes]
rs55908804	1.00[AMR][1000 genomes]
rs56142225	0.86[ASN][1000 genomes]
rs56171120	0.86[ASN][1000 genomes]
rs56334028	1.00[AMR][1000 genomes]
rs56343229	0.86[ASN][1000 genomes]
rs56808069	0.86[ASN][1000 genomes]
rs56984031	0.86[ASN][1000 genomes]
rs57115412	0.86[ASN][1000 genomes]
rs57384187	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57393325	0.86[ASN][1000 genomes]
rs57577978	1.00[AMR][1000 genomes]
rs57642592	0.86[ASN][1000 genomes]
rs57877505	1.00[AMR][1000 genomes]
rs57884237	0.87[AMR][1000 genomes]
rs58102808	0.86[ASN][1000 genomes]
rs58421256	0.86[ASN][1000 genomes]
rs58670711	1.00[AMR][1000 genomes]
rs58727177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58898896	0.86[ASN][1000 genomes]
rs60044681	0.86[ASN][1000 genomes]
rs60206858	0.86[ASN][1000 genomes]
rs60218608	0.86[ASN][1000 genomes]
rs60219367	0.86[ASN][1000 genomes]
rs60636561	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60759798	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60981452	0.86[ASN][1000 genomes]
rs61132076	0.86[ASN][1000 genomes]
rs6592549	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6592550	0.86[ASN][1000 genomes]
rs7102679	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs7106817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7107268	0.86[ASN][1000 genomes]
rs7110062	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7113898	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7117831	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7120494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7121118	1.00[AMR][1000 genomes]
rs7126381	1.00[CEU][hapmap]
rs7126696	0.86[ASN][1000 genomes]
rs7127358	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7129659	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7129774	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs73549014	0.86[ASN][1000 genomes]
rs73549059	0.86[ASN][1000 genomes]
rs73555974	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73555986	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555988	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557906	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557990	1.00[AMR][1000 genomes]
rs73561882	0.86[ASN][1000 genomes]
rs73561885	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73565826	0.86[ASN][1000 genomes]
rs73565828	0.86[ASN][1000 genomes]
rs73565829	0.86[ASN][1000 genomes]
rs73565839	0.86[ASN][1000 genomes]
rs73565840	0.86[ASN][1000 genomes]
rs73565842	0.86[ASN][1000 genomes]
rs7924965	0.86[ASN][1000 genomes]
rs7925320	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7925695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7926891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7943916	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7947458	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826059	1.00[ASN][1000 genomes]
rs826068	1.00[ASN][1000 genomes]
rs826069	1.00[ASN][1000 genomes]
rs826071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs826072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs826073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs826075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826079	1.00[CEU][hapmap]
rs826081	1.00[CEU][hapmap]
rs826082	1.00[CEU][hapmap]
rs826085	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947840	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
2	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
5	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
6	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
7	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:73736200-73751200	Strong transcription	Fetal Thymus	thymus
9	chr11:73737000-73753400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
11	chr11:73738400-73750800	Strong transcription	Fetal Brain Female	brain
12	chr11:73738600-73751000	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:73738600-73753200	Strong transcription	Fetal Intestine Large	intestine
14	chr11:73738600-73754600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:73738600-73754600	Strong transcription	Dnd41	blood
16	chr11:73738600-73754800	Strong transcription	Stomach Smooth Muscle	stomach
17	chr11:73738800-73748600	Strong transcription	Brain Hippocampus Middle	brain
18	chr11:73738800-73749200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:73738800-73751200	Strong transcription	Placenta	Placenta
20	chr11:73738800-73753200	Strong transcription	Brain Germinal Matrix	brain
21	chr11:73738800-73753400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:73739000-73751400	Strong transcription	Left Ventricle	heart
23	chr11:73739000-73753600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:73739000-73753600	Strong transcription	HSMMtube	muscle
25	chr11:73739200-73753600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:73739600-73753200	Strong transcription	Thymus	Thymus
27	chr11:73739600-73753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:73739800-73748400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:73739800-73750800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:73740000-73748400	Strong transcription	Brain Anterior Caudate	brain
31	chr11:73740000-73753200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:73740000-73753400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:73740200-73753400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:73740600-73753400	Strong transcription	Ovary	ovary
36	chr11:73741400-73748600	Strong transcription	Brain Angular Gyrus	brain
37	chr11:73741400-73750800	Strong transcription	HSMM	muscle
38	chr11:73741400-73753200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr11:73741400-73753200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:73742200-73750800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:73742400-73748400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:73742400-73750800	Strong transcription	Primary T cells from cord blood	blood
43	chr11:73742400-73751200	Strong transcription	Liver	Liver
44	chr11:73742600-73753600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:73742600-73758000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:73742800-73749800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:73742800-73751200	Strong transcription	Primary B cells from cord blood	blood
48	chr11:73742800-73751400	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:73742800-73753200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:73742800-73754600	Strong transcription	Primary B cells from peripheral blood	blood

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