Variant report

Variant	rs73555988
Chromosome Location	chr11:73750228-73750229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1095422	0.85[AMR][1000 genomes]
rs17132620	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132629	1.00[AMR][1000 genomes]
rs17132632	0.88[AFR][1000 genomes]
rs17132641	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55870513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908804	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56334028	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57577978	1.00[AMR][1000 genomes]
rs57877505	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57884237	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58670711	1.00[AMR][1000 genomes]
rs58727177	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557990	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561885	0.87[AMR][1000 genomes]
rs7943916	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
4	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
5	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
6	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:73736200-73751200	Strong transcription	Fetal Thymus	thymus
8	chr11:73737000-73753400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
10	chr11:73738400-73750800	Strong transcription	Fetal Brain Female	brain
11	chr11:73738600-73751000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:73738600-73753200	Strong transcription	Fetal Intestine Large	intestine
13	chr11:73738600-73754600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:73738600-73754600	Strong transcription	Dnd41	blood
15	chr11:73738600-73754800	Strong transcription	Stomach Smooth Muscle	stomach
16	chr11:73738800-73751200	Strong transcription	Placenta	Placenta
17	chr11:73738800-73753200	Strong transcription	Brain Germinal Matrix	brain
18	chr11:73738800-73753400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:73739000-73751400	Strong transcription	Left Ventricle	heart
20	chr11:73739000-73753600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:73739000-73753600	Strong transcription	HSMMtube	muscle
22	chr11:73739200-73753600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:73739600-73753200	Strong transcription	Thymus	Thymus
24	chr11:73739600-73753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:73739800-73750800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:73740000-73753200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:73740000-73753400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:73740200-73753400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:73740600-73753400	Strong transcription	Ovary	ovary
31	chr11:73741400-73750800	Strong transcription	HSMM	muscle
32	chr11:73741400-73753200	Strong transcription	Primary hematopoietic stem cells	blood
33	chr11:73741400-73753200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:73742200-73750800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:73742400-73750800	Strong transcription	Primary T cells from cord blood	blood
36	chr11:73742400-73751200	Strong transcription	Liver	Liver
37	chr11:73742600-73753600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:73742600-73758000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:73742800-73751200	Strong transcription	Primary B cells from cord blood	blood
40	chr11:73742800-73751400	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:73742800-73753200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:73742800-73754600	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:73743000-73753200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:73743000-73755200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:73743200-73753000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:73743400-73750600	Strong transcription	HUVEC	blood vessel
47	chr11:73743400-73751200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:73743400-73751200	Strong transcription	Adipose Nuclei	Adipose
49	chr11:73743400-73754400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:73743600-73753200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links