Variant report

Variant	rs17132632
Chromosome Location	chr11:73761327-73761328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73759873..73761447-chr11:73795987..73798822,2	K562	blood:
2	chr11:73751293..73752862-chr11:73761257..73763074,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10219224	1.00[CEU][hapmap]
rs10488770	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10501413	1.00[CEU][hapmap]
rs10501414	1.00[CEU][hapmap]
rs11235973	1.00[CEU][hapmap]
rs11235982	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12280063	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12286033	1.00[CEU][hapmap]
rs12291461	1.00[GIH][hapmap]
rs1618727	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1685340	1.00[CEU][hapmap]
rs1685343	1.00[GIH][hapmap]
rs17132567	1.00[CEU][hapmap]
rs17132610	0.93[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[AMR][1000 genomes]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs17132629	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs17132641	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs17132796	1.00[CEU][hapmap]
rs17132801	1.00[CEU][hapmap]
rs17132816	1.00[CEU][hapmap]
rs17132818	1.00[CEU][hapmap]
rs17132826	1.00[CEU][hapmap]
rs17132836	1.00[CEU][hapmap]
rs17132837	1.00[CEU][hapmap]
rs17132855	1.00[CEU][hapmap]
rs17132864	1.00[CEU][hapmap]
rs17132870	1.00[CEU][hapmap]
rs17160052	1.00[CEU][hapmap]
rs1726759	1.00[CEU][hapmap]
rs1726760	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1726761	1.00[GIH][hapmap]
rs1790393	1.00[GIH][hapmap]
rs4575301	1.00[CEU][hapmap]
rs55793503	1.00[AMR][1000 genomes]
rs55870513	0.87[AFR][1000 genomes]
rs55908804	0.82[AFR][1000 genomes]
rs56334028	0.90[AFR][1000 genomes]
rs57877505	0.85[AFR][1000 genomes]
rs57884237	0.85[AFR][1000 genomes]
rs60636561	1.00[AMR][1000 genomes]
rs60759798	1.00[AMR][1000 genomes]
rs6592549	1.00[CEU][hapmap]
rs6592550	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7102679	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7106817	1.00[CEU][hapmap]
rs7110062	1.00[CEU][hapmap]
rs7113898	1.00[CEU][hapmap]
rs7117091	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7117831	0.93[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7120494	1.00[CEU][hapmap]
rs7121118	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7123549	0.83[AMR][1000 genomes]
rs7126381	1.00[CEU][hapmap]
rs7127358	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7129659	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7129774	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7130095	1.00[MEX][hapmap]
rs73555974	1.00[AMR][1000 genomes]
rs73555986	1.00[AMR][1000 genomes]
rs73555988	0.88[AFR][1000 genomes]
rs73557906	1.00[AMR][1000 genomes]
rs73557990	0.87[AFR][1000 genomes]
rs7924965	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7925320	1.00[CEU][hapmap]
rs7925695	1.00[CEU][hapmap]
rs7926891	1.00[CEU][hapmap]
rs7947458	1.00[CEU][hapmap]
rs826047	1.00[GIH][hapmap]
rs826048	1.00[CEU][hapmap]
rs826063	1.00[GIH][hapmap]
rs826065	1.00[GIH][hapmap]
rs826071	1.00[CEU][hapmap]
rs826072	1.00[CEU][hapmap]
rs826073	1.00[CEU][hapmap]
rs826075	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs826079	1.00[CEU][hapmap]
rs826081	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs826082	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs826086	1.00[GIH][hapmap]
rs826088	1.00[GIH][hapmap]
rs826091	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs947840	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
3	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:73745400-73764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73746000-73768000	Weak transcription	NHEK	skin
6	chr11:73746400-73766000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:73747000-73767000	Weak transcription	HepG2	liver
8	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:73750800-73800400	Weak transcription	HMEC	breast
10	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:73753000-73770400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:73753200-73761600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:73753200-73765200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:73753200-73766600	Weak transcription	NH-A	brain
16	chr11:73753200-73767200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:73753200-73768200	Weak transcription	K562	blood
18	chr11:73753200-73770800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:73753200-73770800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:73753200-73778200	Weak transcription	Pancreas	Pancrea
21	chr11:73753200-73781600	Weak transcription	Fetal Kidney	kidney
22	chr11:73753200-73782000	Weak transcription	Fetal Brain Male	brain
23	chr11:73753200-73783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:73753200-73783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
26	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
27	chr11:73753400-73781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:73753400-73784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:73753800-73767400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:73753800-73768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:73756000-73762400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:73756000-73768800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:73756200-73762600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:73756200-73766800	Strong transcription	HSMM	muscle
35	chr11:73756200-73768800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:73756400-73764800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:73756400-73768800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:73756800-73761400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:73757000-73769000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:73757200-73762400	Strong transcription	Fetal Stomach	stomach
41	chr11:73757200-73769000	Strong transcription	Dnd41	blood
42	chr11:73757200-73769400	Strong transcription	Primary B cells from cord blood	blood
43	chr11:73757200-73770200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:73757400-73769000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:73757800-73762000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:73758000-73762000	Strong transcription	Fetal Muscle Leg	muscle
47	chr11:73758000-73764400	Strong transcription	Thymus	Thymus
48	chr11:73758200-73762000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:73758200-73765000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:73758200-73765000	Strong transcription	Left Ventricle	heart

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