Variant report

Variant	rs7117091
Chromosome Location	chr11:73732525-73732526
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73726799..73729660-chr11:73730296..73732762,2	MCF-7	breast:
2	chr11:73721505..73724045-chr11:73730845..73732782,2	MCF-7	breast:
3	chr11:73725089..73727060-chr11:73732436..73734967,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1095427	0.82[AMR][1000 genomes]
rs11235982	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs11235989	0.82[AMR][1000 genomes]
rs11825062	0.82[AMR][1000 genomes]
rs12277532	0.94[AMR][1000 genomes]
rs12280063	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12291461	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1618727	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1685343	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17132632	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1726759	0.82[AMR][1000 genomes]
rs1726760	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1726761	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1790393	1.00[GIH][hapmap]
rs7117831	1.00[MEX][hapmap]
rs7120494	0.82[AMR][1000 genomes]
rs7127358	1.00[GIH][hapmap]
rs7129659	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7129774	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7130095	1.00[MEX][hapmap]
rs73552741	0.88[AMR][1000 genomes]
rs73552745	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826042	0.82[AMR][1000 genomes]
rs826047	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs826048	0.82[AMR][1000 genomes]
rs826051	0.82[AMR][1000 genomes]
rs826063	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs826065	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs826071	0.82[AMR][1000 genomes]
rs826072	0.82[AMR][1000 genomes]
rs826073	0.82[AMR][1000 genomes]
rs826075	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs826079	0.94[AMR][1000 genomes]
rs826081	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs826082	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs826085	0.82[AMR][1000 genomes]
rs826086	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs826087	0.82[AMR][1000 genomes]
rs826088	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs826091	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv976527	chr11:73728292-73738902	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725200-73736400	Weak transcription	NHEK	skin
12	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
14	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73728400-73738400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:73728600-73738600	Weak transcription	Dnd41	blood
17	chr11:73728800-73734600	Genic enhancers	Placenta	Placenta
18	chr11:73728800-73736800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:73729000-73732600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:73729000-73732800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:73729000-73733200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:73729200-73732600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr11:73729200-73732600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:73729200-73732800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:73729200-73736600	Weak transcription	A549	lung
27	chr11:73729200-73740000	Weak transcription	Fetal Lung	lung
28	chr11:73729400-73732600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:73729400-73732600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:73729400-73732600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:73729600-73732600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:73729800-73732800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr11:73729800-73733800	Enhancers	Primary B cells from peripheral blood	blood
34	chr11:73729800-73733800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:73730400-73737800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:73730400-73738400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:73730600-73733200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:73730600-73733800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:73730600-73734000	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:73730600-73735800	Weak transcription	NHDF-Ad	bronchial
41	chr11:73730600-73736200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr11:73730600-73741400	Weak transcription	Hela-S3	cervix
43	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:73730800-73735600	Weak transcription	K562	blood
45	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
48	chr11:73731000-73732800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:73731000-73735800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus

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