Variant report

Variant	rs12291461
Chromosome Location	chr11:73736688-73736689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73724598..73727385-chr11:73734984..73736826,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10488770	1.00[GIH][hapmap]
rs1095419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	1.00[AMR][1000 genomes]
rs1095423	0.83[YRI][hapmap]
rs1095428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235982	1.00[GIH][hapmap]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12285706	0.83[YRI][hapmap]
rs12287317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618727	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1622307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685339	0.84[YRI][hapmap]
rs1685341	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1685342	0.87[YRI][hapmap]
rs1685343	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132632	1.00[GIH][hapmap]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726755	0.83[YRI][hapmap]
rs1726756	0.88[YRI][hapmap]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1726761	1.00[ASW][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790383	0.83[YRI][hapmap]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	1.00[GIH][hapmap];1.00[AMR][1000 genomes]
rs1790408	0.83[YRI][hapmap]
rs1790409	0.83[YRI][hapmap]
rs1944971	0.83[YRI][hapmap]
rs2950412	0.86[YRI][hapmap]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs699141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117091	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7123549	1.00[EUR][1000 genomes]
rs7127358	1.00[GIH][hapmap]
rs7129659	1.00[GIH][hapmap]
rs7129774	1.00[GIH][hapmap]
rs826032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826046	0.83[YRI][hapmap]
rs826047	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826049	0.83[YRI][hapmap]
rs826052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826074	0.88[YRI][hapmap]
rs826075	1.00[GIH][hapmap]
rs826076	0.80[YRI][hapmap]
rs826077	0.83[YRI][hapmap]
rs826080	1.00[EUR][1000 genomes]
rs826081	1.00[GIH][hapmap]
rs826082	1.00[GIH][hapmap]
rs826086	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826091	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs861144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv976527	chr11:73728292-73738902	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3428878	chr11:73736186-73737649	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
13	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:73728400-73738400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:73728600-73738600	Weak transcription	Dnd41	blood
16	chr11:73728800-73736800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:73729200-73740000	Weak transcription	Fetal Lung	lung
19	chr11:73730400-73737800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:73730400-73738400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:73730600-73741400	Weak transcription	Hela-S3	cervix
22	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
26	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus
27	chr11:73731200-73736800	Weak transcription	Ovary	ovary
28	chr11:73731200-73743800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:73731200-73744800	Weak transcription	HepG2	liver
30	chr11:73731400-73736800	Weak transcription	Lung	lung
31	chr11:73731400-73739000	Weak transcription	Pancreas	Pancrea
32	chr11:73731400-73741400	Weak transcription	Brain Angular Gyrus	brain
33	chr11:73731400-73741400	Weak transcription	Gastric	stomach
34	chr11:73731400-73743800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:73731400-73744000	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
37	chr11:73731600-73736800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:73731800-73736800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:73731800-73738600	Weak transcription	Right Atrium	heart
40	chr11:73731800-73740000	Weak transcription	Right Ventricle	heart
41	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
42	chr11:73732200-73736800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:73732200-73739000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:73732200-73741600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:73732200-73744000	Weak transcription	Colonic Mucosa	Colon
46	chr11:73732600-73736800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:73732600-73741400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:73733000-73737800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:73733600-73740000	Weak transcription	Brain Anterior Caudate	brain
50	chr11:73734000-73736800	Weak transcription	Fetal Brain Female	brain

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