Variant report

Variant	rs699141
Chromosome Location	chr11:73791394-73791395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73782168..73784901-chr11:73790303..73791833,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1095419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	1.00[AMR][1000 genomes]
rs1095428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[AMR][1000 genomes]
rs11235981	1.00[AMR][1000 genomes]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277407	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280063	1.00[EUR][1000 genomes]
rs12287317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1622307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	1.00[AMR][1000 genomes]
rs1685343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[AMR][1000 genomes]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[EUR][1000 genomes]
rs1726761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs35098388	1.00[EUR][1000 genomes]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs7123549	1.00[EUR][1000 genomes]
rs826032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826080	1.00[EUR][1000 genomes]
rs826086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826091	1.00[EUR][1000 genomes]
rs861144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv3462519	chr11:73790525-73792280	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3462541	chr11:73790554-73792276	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3462530	chr11:73790595-73792217	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3462552	chr11:73790595-73792217	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73800400	Weak transcription	HMEC	breast
3	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
4	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
5	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:73768800-73798200	Weak transcription	NHEK	skin
7	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:73778800-73792800	Strong transcription	Primary B cells from cord blood	blood
9	chr11:73779000-73792600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:73781200-73795800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
12	chr11:73782200-73796400	Weak transcription	Right Ventricle	heart
13	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:73782800-73795400	Weak transcription	K562	blood
15	chr11:73784200-73796600	Weak transcription	Psoas Muscle	Psoas
16	chr11:73784200-73801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:73785400-73792000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:73785400-73795200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:73785400-73800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:73785600-73795000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:73785600-73796800	Weak transcription	Fetal Kidney	kidney
22	chr11:73785600-73797400	Weak transcription	HUVEC	blood vessel
23	chr11:73785600-73800200	Weak transcription	NH-A	brain
24	chr11:73785600-73803400	Weak transcription	NHDF-Ad	bronchial
25	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:73786800-73792400	Strong transcription	HSMMtube	muscle
27	chr11:73786800-73792800	Strong transcription	HSMM	muscle
28	chr11:73787200-73795200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:73787600-73793000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:73787800-73811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:73788200-73792600	Strong transcription	Fetal Brain Female	brain
32	chr11:73788400-73792600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:73789400-73800800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:73789600-73791800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:73789600-73792000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:73789600-73795000	Weak transcription	Brain Anterior Caudate	brain
37	chr11:73789600-73795200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:73789600-73795200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:73789600-73795200	Weak transcription	Ovary	ovary
40	chr11:73789600-73795200	Weak transcription	Pancreas	Pancrea
41	chr11:73789600-73795200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:73789600-73796400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:73789600-73796400	Weak transcription	GM12878-XiMat	blood
44	chr11:73789600-73796800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:73789600-73796800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:73789600-73798600	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:73789600-73799400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:73789600-73799400	Weak transcription	Osteobl	bone
49	chr11:73789600-73800600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:73789800-73791800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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