Variant report

Variant	rs826034
Chromosome Location	chr11:73780123-73780124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73691754..73696567-chr11:73778152..73784121,11	MCF-7	breast:
2	chr11:73679005..73682645-chr11:73778281..73782136,5	MCF-7	breast:
3	chr11:73778180..73781840-chr11:73797440..73801034,4	MCF-7	breast:
4	chr11:73679561..73684546-chr11:73778723..73783416,5	MCF-7	breast:
5	chr11:73747729..73749562-chr11:73778913..73781744,2	MCF-7	breast:
6	chr11:73768579..73770976-chr11:73779014..73780839,2	K562	blood:
7	chr11:73714167..73717044-chr11:73777878..73780816,2	MCF-7	breast:
8	chr11:73691101..73695528-chr11:73777647..73786599,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255847	Chromatin interaction
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1095419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095423	0.92[AFR][1000 genomes]
rs1095426	0.80[AFR][1000 genomes]
rs1095428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[AMR][1000 genomes]
rs11235981	1.00[AMR][1000 genomes]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[EUR][1000 genomes]
rs12286971	0.88[AFR][1000 genomes]
rs12287317	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1622307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1632245	0.88[AFR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	1.00[AMR][1000 genomes]
rs1685342	0.83[AFR][1000 genomes]
rs1685343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[AMR][1000 genomes]
rs1726742	0.85[AFR][1000 genomes]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726755	0.85[AFR][1000 genomes]
rs1726756	0.83[AFR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[EUR][1000 genomes]
rs1726761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790383	0.83[AFR][1000 genomes]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	1.00[AMR][1000 genomes]
rs1790402	0.92[AFR][1000 genomes]
rs28604496	0.88[AFR][1000 genomes]
rs35098388	1.00[EUR][1000 genomes]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs699141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123549	1.00[EUR][1000 genomes]
rs826032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826038	0.88[AFR][1000 genomes]
rs826040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826046	0.97[AFR][1000 genomes]
rs826047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826049	0.97[AFR][1000 genomes]
rs826052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826074	0.83[AFR][1000 genomes]
rs826076	0.88[AFR][1000 genomes]
rs826077	0.85[AFR][1000 genomes]
rs826080	1.00[EUR][1000 genomes]
rs826084	0.88[AFR][1000 genomes]
rs826086	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826090	0.94[AFR][1000 genomes]
rs826091	1.00[EUR][1000 genomes]
rs861144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:73750800-73800400	Weak transcription	HMEC	breast
4	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:73753200-73781600	Weak transcription	Fetal Kidney	kidney
7	chr11:73753200-73782000	Weak transcription	Fetal Brain Male	brain
8	chr11:73753200-73783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:73753200-73783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
11	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
12	chr11:73753400-73781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:73753400-73784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:73758400-73782800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:73759000-73783400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:73759200-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:73759400-73780600	Weak transcription	Brain Germinal Matrix	brain
18	chr11:73759400-73781400	Weak transcription	Spleen	Spleen
19	chr11:73759400-73783600	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:73760000-73780200	Weak transcription	Fetal Intestine Large	intestine
21	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:73760200-73780600	Weak transcription	Hela-S3	cervix
23	chr11:73760600-73783200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:73760600-73785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:73760800-73780600	Weak transcription	Right Ventricle	heart
26	chr11:73760800-73781200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:73760800-73782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:73761000-73781600	Weak transcription	Brain Anterior Caudate	brain
29	chr11:73762000-73780400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:73764000-73781400	Weak transcription	Brain Angular Gyrus	brain
31	chr11:73765000-73781400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:73765000-73781800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:73765400-73784000	Weak transcription	Fetal Intestine Small	intestine
34	chr11:73765600-73781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:73767200-73781200	Weak transcription	Liver	Liver
36	chr11:73767600-73781600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:73767600-73783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:73768000-73783200	Weak transcription	GM12878-XiMat	blood
39	chr11:73768200-73781800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:73768400-73780600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:73768600-73780200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:73768600-73780400	Weak transcription	Fetal Lung	lung
43	chr11:73768600-73780600	Weak transcription	NH-A	brain
44	chr11:73768600-73780800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:73768600-73781200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:73768600-73781400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:73768800-73780200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:73768800-73780400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:73768800-73781200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:73768800-73781600	Weak transcription	Rectal Mucosa Donor 31	rectum

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