Variant report

Variant	rs826037
Chromosome Location	chr11:73781235-73781236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73691754..73696567-chr11:73778152..73784121,11	MCF-7	breast:
2	chr11:73679005..73682645-chr11:73778281..73782136,5	MCF-7	breast:
3	chr11:73778180..73781840-chr11:73797440..73801034,4	MCF-7	breast:
4	chr11:73780866..73784002-chr11:73798180..73802078,6	MCF-7	breast:
5	chr11:73679561..73684546-chr11:73778723..73783416,5	MCF-7	breast:
6	chr11:73747729..73749562-chr11:73778913..73781744,2	MCF-7	breast:
7	chr11:73780255..73782526-chr11:73881717..73883400,2	MCF-7	breast:
8	chr11:73691101..73695528-chr11:73777647..73786599,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000214517	Chromatin interaction
ENSG00000168014	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000255847	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1095419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095423	0.94[AFR][1000 genomes]
rs1095426	0.81[AFR][1000 genomes]
rs1095428	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[AMR][1000 genomes]
rs11235981	1.00[AMR][1000 genomes]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[EUR][1000 genomes]
rs12286971	0.89[AFR][1000 genomes]
rs12287317	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1622307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1632245	0.89[AFR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	1.00[AMR][1000 genomes]
rs1685342	0.85[AFR][1000 genomes]
rs1685343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[AMR][1000 genomes]
rs1726742	0.86[AFR][1000 genomes]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726755	0.86[AFR][1000 genomes]
rs1726756	0.85[AFR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[EUR][1000 genomes]
rs1726761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790383	0.85[AFR][1000 genomes]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	1.00[AMR][1000 genomes]
rs1790402	0.94[AFR][1000 genomes]
rs28604496	0.89[AFR][1000 genomes]
rs35098388	1.00[EUR][1000 genomes]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs699141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123549	1.00[EUR][1000 genomes]
rs826032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826038	0.89[AFR][1000 genomes]
rs826040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826046	0.95[AFR][1000 genomes]
rs826047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826049	0.95[AFR][1000 genomes]
rs826052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826074	0.85[AFR][1000 genomes]
rs826076	0.89[AFR][1000 genomes]
rs826077	0.86[AFR][1000 genomes]
rs826080	1.00[EUR][1000 genomes]
rs826084	0.89[AFR][1000 genomes]
rs826086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826090	0.95[AFR][1000 genomes]
rs826091	1.00[EUR][1000 genomes]
rs861144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:73750800-73800400	Weak transcription	HMEC	breast
4	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:73753200-73781600	Weak transcription	Fetal Kidney	kidney
6	chr11:73753200-73782000	Weak transcription	Fetal Brain Male	brain
7	chr11:73753200-73783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73753200-73783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
10	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
11	chr11:73753400-73781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:73753400-73784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:73758400-73782800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:73759000-73783400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:73759200-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:73759400-73781400	Weak transcription	Spleen	Spleen
17	chr11:73759400-73783600	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:73760600-73783200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:73760600-73785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:73760800-73782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:73761000-73781600	Weak transcription	Brain Anterior Caudate	brain
23	chr11:73764000-73781400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:73765000-73781400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:73765000-73781800	Weak transcription	Brain Substantia Nigra	brain
26	chr11:73765400-73784000	Weak transcription	Fetal Intestine Small	intestine
27	chr11:73765600-73781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:73767600-73781600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:73767600-73783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:73768000-73783200	Weak transcription	GM12878-XiMat	blood
31	chr11:73768200-73781800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:73768600-73781400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:73768800-73781600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:73768800-73798200	Weak transcription	NHEK	skin
35	chr11:73769000-73782000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:73769000-73783400	Weak transcription	Ovary	ovary
37	chr11:73769000-73788600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:73769200-73781400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:73769200-73781600	Weak transcription	K562	blood
40	chr11:73771000-73783800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:73771000-73784800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:73771200-73783400	Weak transcription	Lung	lung
43	chr11:73771200-73783800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:73771200-73784000	Weak transcription	Fetal Stomach	stomach
45	chr11:73771200-73785200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:73771200-73785200	Weak transcription	Esophagus	oesophagus
47	chr11:73771200-73789000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:73771600-73781800	Weak transcription	Thymus	Thymus
49	chr11:73777000-73788400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:73777600-73788600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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