Variant report

Variant	rs826063
Chromosome Location	chr11:73787324-73787325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73779673..73783473-chr11:73783793..73787357,3	K562	blood:
2	chr11:73780196..73782552-chr11:73785196..73788423,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10488770	1.00[GIH][hapmap]
rs1095419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	1.00[AMR][1000 genomes]
rs1095428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[AMR][1000 genomes]
rs11235981	1.00[AMR][1000 genomes]
rs11235982	1.00[GIH][hapmap]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12287317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291461	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618727	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1622307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	1.00[AMR][1000 genomes]
rs1685343	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[AMR][1000 genomes]
rs17132632	1.00[GIH][hapmap]
rs17132873	1.00[GIH][hapmap]
rs17132882	1.00[GIH][hapmap]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1726761	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	0.91[ASW][hapmap];1.00[GIH][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35098388	1.00[EUR][1000 genomes]
rs36207715	1.00[EUR][1000 genomes]
rs3897548	1.00[GIH][hapmap]
rs4489773	1.00[GIH][hapmap]
rs6592550	1.00[GIH][hapmap]
rs699140	1.00[EUR][1000 genomes]
rs699141	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117091	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7123549	1.00[EUR][1000 genomes]
rs7127358	1.00[GIH][hapmap]
rs7129659	1.00[GIH][hapmap]
rs7129774	1.00[GIH][hapmap]
rs7924965	1.00[GIH][hapmap]
rs826032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826047	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.91[AMR][1000 genomes]
rs826059	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826065	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826068	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826075	1.00[GIH][hapmap]
rs826080	1.00[EUR][1000 genomes]
rs826081	1.00[GIH][hapmap]
rs826082	1.00[GIH][hapmap]
rs826086	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826091	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs861144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73800400	Weak transcription	HMEC	breast
3	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
4	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
5	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:73768800-73798200	Weak transcription	NHEK	skin
7	chr11:73769000-73788600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:73771200-73789000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:73777000-73788400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:73777600-73788600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:73778000-73790600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:73778200-73789800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:73778200-73791000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:73778400-73790000	Strong transcription	Fetal Thymus	thymus
16	chr11:73778800-73790200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:73778800-73790400	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:73778800-73790400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr11:73778800-73792800	Strong transcription	Primary B cells from cord blood	blood
20	chr11:73779000-73790200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:73779000-73792600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:73779200-73791000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:73779600-73790800	Strong transcription	Primary T cells from cord blood	blood
24	chr11:73779800-73789000	Weak transcription	HepG2	liver
25	chr11:73780200-73790400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:73780200-73790800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:73780600-73790000	Strong transcription	Hela-S3	cervix
28	chr11:73780600-73790400	Strong transcription	Dnd41	blood
29	chr11:73781200-73795800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:73781400-73790200	Strong transcription	Duodenum Mucosa	Duodenum
31	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
32	chr11:73782200-73796400	Weak transcription	Right Ventricle	heart
33	chr11:73782600-73789000	Weak transcription	Pancreas	Pancrea
34	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:73782800-73790400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:73782800-73790600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:73782800-73795400	Weak transcription	K562	blood
38	chr11:73783200-73789800	Strong transcription	Adipose Nuclei	Adipose
39	chr11:73783400-73789800	Strong transcription	Brain Angular Gyrus	brain
40	chr11:73783600-73790400	Strong transcription	Placenta	Placenta
41	chr11:73784200-73796600	Weak transcription	Psoas Muscle	Psoas
42	chr11:73784200-73801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:73785000-73789000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:73785400-73788200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:73785400-73788800	Weak transcription	Fetal Brain Male	brain
46	chr11:73785400-73789000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:73785400-73789000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:73785400-73789000	Weak transcription	Fetal Lung	lung
49	chr11:73785400-73789000	Weak transcription	A549	lung
50	chr11:73785400-73789200	Weak transcription	Osteobl	bone

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