Variant report

Variant	rs826070
Chromosome Location	chr11:73742264-73742265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73739984..73742799-chr11:73744371..73746997,2	MCF-7	breast:
2	chr11:73692401..73693952-chr11:73741381..73743251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1095419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095423	0.95[YRI][hapmap]
rs1095428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[AMR][1000 genomes]
rs11235981	1.00[AMR][1000 genomes]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[EUR][1000 genomes]
rs12285706	0.92[YRI][hapmap]
rs12286971	0.85[AFR][1000 genomes]
rs12287317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291461	0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1622307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1632245	0.85[AFR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1685342	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs1685343	0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[AMR][1000 genomes]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726755	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1726756	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[EUR][1000 genomes]
rs1726761	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790383	0.92[YRI][hapmap]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	1.00[AMR][1000 genomes]
rs1790408	0.95[YRI][hapmap]
rs1790409	0.91[YRI][hapmap]
rs1944971	0.95[YRI][hapmap]
rs28604496	0.85[AFR][1000 genomes]
rs2950412	0.91[YRI][hapmap]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs699141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123549	1.00[EUR][1000 genomes]
rs826032	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826040	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826046	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs826047	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826049	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs826052	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826074	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs826076	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs826077	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs826080	1.00[EUR][1000 genomes]
rs826084	0.85[AFR][1000 genomes]
rs826086	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826090	0.87[YRI][hapmap]
rs826091	1.00[EUR][1000 genomes]
rs861144	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
2	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
15	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus
16	chr11:73731200-73743800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:73731200-73744800	Weak transcription	HepG2	liver
18	chr11:73731400-73743800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:73731400-73744000	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
22	chr11:73732200-73744000	Weak transcription	Colonic Mucosa	Colon
23	chr11:73734000-73743000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:73734400-73743600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:73735600-73742400	Weak transcription	Liver	Liver
27	chr11:73735800-73745400	Strong transcription	Fetal Stomach	stomach
28	chr11:73736000-73742400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:73736200-73743200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:73736200-73743400	Weak transcription	Brain Substantia Nigra	brain
31	chr11:73736200-73744200	Weak transcription	Stomach Mucosa	stomach
32	chr11:73736200-73744200	Weak transcription	K562	blood
33	chr11:73736200-73751200	Strong transcription	Fetal Thymus	thymus
34	chr11:73736800-73747800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:73737000-73745400	Strong transcription	Fetal Intestine Small	intestine
36	chr11:73737000-73753400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
38	chr11:73737200-73743200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:73737400-73742600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:73737400-73743000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:73738000-73742800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:73738200-73743000	Weak transcription	Osteobl	bone
43	chr11:73738400-73742800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:73738400-73743000	Weak transcription	NHEK	skin
45	chr11:73738400-73743400	Weak transcription	HMEC	breast
46	chr11:73738400-73744200	Weak transcription	NHDF-Ad	bronchial
47	chr11:73738400-73744200	Weak transcription	NHLF	lung
48	chr11:73738400-73746600	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr11:73738400-73750800	Strong transcription	Fetal Brain Female	brain
50	chr11:73738600-73742800	Weak transcription	Muscle Satellite Cultured Cells	--

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