Variant report

Variant	rs1095423
Chromosome Location	chr11:73796683-73796684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:28)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:28 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr11:73796614-73798110	PBDE	blood:	n/a	n/a
2	MYC	chr11:73796639-73796939	K562	blood:	n/a	n/a
3	TBP	chr11:73796616-73796892	K562	blood:	n/a	n/a
4	NR2F2	chr11:73796528-73797839	K562	blood:	n/a	n/a
5	MAFF	chr11:73796500-73798006	K562	blood:	n/a	chr11:73796742-73796760
6	MAX	chr11:73796636-73796894	K562	blood:	n/a	n/a
7	BHLHE40	chr11:73796641-73796839	HepG2	liver:	n/a	n/a
8	EP300	chr11:73796453-73798062	K562	blood:	n/a	n/a
9	TAL1	chr11:73796579-73796889	K562	blood:	n/a	n/a
10	USF1	chr11:73796490-73796921	K562	blood:	n/a	n/a
11	MAFK	chr11:73796581-73796918	HepG2	liver:	n/a	chr11:73796744-73796759
12	CUX1	chr11:73796606-73798067	K562	blood:	n/a	n/a
13	TBL1XR1	chr11:73796628-73798008	K562	blood:	n/a	n/a
14	BACH1	chr11:73796597-73798009	K562	blood:	n/a	n/a
15	FOSL2	chr11:73796642-73796912	HepG2	liver:	n/a	n/a
16	MAFK	chr11:73796580-73796883	HepG2	liver:	n/a	chr11:73796744-73796759
17	UBTF	chr11:73796641-73796826	K562	blood:	n/a	n/a
18	MAX	chr11:73796648-73796925	K562	blood:	n/a	n/a
19	MAX	chr11:73796619-73796933	K562	blood:	n/a	n/a
20	JUND	chr11:73796529-73797946	K562	blood:	n/a	n/a
21	UBTF	chr11:73796603-73796842	K562	blood:	n/a	n/a
22	POLR2A	chr11:73796569-73798248	PBDE	blood:	n/a	n/a
23	BHLHE40	chr11:73796488-73796935	K562	blood:	n/a	n/a
24	RCOR1	chr11:73796572-73797950	K562	blood:	n/a	n/a
25	CCNT2	chr11:73796529-73796905	K562	blood:	n/a	n/a
26	MAFK	chr11:73796486-73796992	K562	blood:	n/a	chr11:73796744-73796759
27	MAFF	chr11:73796559-73796917	HepG2	liver:	n/a	chr11:73796742-73796760
28	TEAD4	chr11:73796413-73798140	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73691904..73697409-chr11:73796369..73799985,7	K562	blood:
2	chr11:73692980..73694641-chr11:73795807..73797869,2	K562	blood:
3	chr11:73692887..73694821-chr11:73796088..73798230,2	MCF-7	breast:
4	chr11:73759873..73761447-chr11:73795987..73798822,2	K562	blood:

No data

Variant related genes	Relation type
C2CD3	TF binding region
ENSG00000175567	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10898966	0.80[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs1095419	0.92[AFR][1000 genomes]
rs1095420	0.92[AFR][1000 genomes]
rs1095421	0.95[AFR][1000 genomes]
rs1095426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095428	0.89[AFR][1000 genomes]
rs11235979	0.83[YRI][hapmap]
rs12285706	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12286971	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12287317	0.82[AFR][1000 genomes]
rs12291461	0.83[YRI][hapmap]
rs1617256	0.83[YRI][hapmap]
rs1618253	0.83[YRI][hapmap]
rs1632245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1685341	0.83[YRI][hapmap]
rs1685342	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1685343	0.83[YRI][hapmap]
rs17132602	0.83[YRI][hapmap]
rs1726742	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726755	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726756	1.00[ASW][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790383	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790408	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1790409	1.00[YRI][hapmap]
rs1944971	0.80[LWK][hapmap];1.00[YRI][hapmap]
rs28604496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2950412	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs3741133	0.80[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs826032	0.92[AFR][1000 genomes]
rs826034	0.92[AFR][1000 genomes]
rs826036	0.92[AFR][1000 genomes]
rs826037	0.94[AFR][1000 genomes]
rs826038	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826040	0.92[AFR][1000 genomes]
rs826041	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs826043	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs826045	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs826046	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826047	1.00[ASW][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs826049	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826052	0.92[AFR][1000 genomes]
rs826053	0.92[AFR][1000 genomes]
rs826070	0.95[YRI][hapmap]
rs826074	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826076	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826077	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826086	1.00[ASW][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs826088	1.00[ASW][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs826090	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs861144	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73800400	Weak transcription	HMEC	breast
3	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
4	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:73768800-73798200	Weak transcription	NHEK	skin
6	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
8	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:73784200-73801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:73785400-73800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:73785600-73796800	Weak transcription	Fetal Kidney	kidney
12	chr11:73785600-73797400	Weak transcription	HUVEC	blood vessel
13	chr11:73785600-73800200	Weak transcription	NH-A	brain
14	chr11:73785600-73803400	Weak transcription	NHDF-Ad	bronchial
15	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:73787800-73811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:73789400-73800800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:73789600-73796800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:73789600-73796800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:73789600-73798600	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:73789600-73799400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:73789600-73799400	Weak transcription	Osteobl	bone
23	chr11:73789600-73800600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:73789800-73797000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:73789800-73800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:73789800-73800600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:73789800-73801000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:73790000-73800600	Weak transcription	Esophagus	oesophagus
29	chr11:73790200-73800400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:73792800-73797600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:73793800-73800600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:73794600-73823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:73794800-73799000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:73794800-73799600	Strong transcription	Thymus	Thymus
35	chr11:73794800-73800600	Strong transcription	Fetal Thymus	thymus
36	chr11:73794800-73804200	Strong transcription	Brain Angular Gyrus	brain
37	chr11:73794800-73805400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:73794800-73806600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:73794800-73806600	Strong transcription	Fetal Lung	lung
40	chr11:73795000-73797000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:73795000-73797600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:73795000-73798000	Strong transcription	Brain Substantia Nigra	brain
43	chr11:73795000-73798200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:73795000-73798400	Strong transcription	Brain Cingulate Gyrus	brain
45	chr11:73795000-73806000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:73795000-73806000	Strong transcription	Brain Anterior Caudate	brain
47	chr11:73795000-73806400	Strong transcription	Adipose Nuclei	Adipose
48	chr11:73795000-73806600	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:73795000-73808600	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:73795000-73817400	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links