Variant report

Variant	rs12287317
Chromosome Location	chr11:73776658-73776659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1095419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095423	0.82[AFR][1000 genomes]
rs1095428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	1.00[AMR][1000 genomes]
rs11235981	1.00[AMR][1000 genomes]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[EUR][1000 genomes]
rs12291461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1622307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	1.00[AMR][1000 genomes]
rs1685343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	1.00[AMR][1000 genomes]
rs1726742	0.81[AFR][1000 genomes]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[EUR][1000 genomes]
rs1726761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	1.00[AMR][1000 genomes]
rs1790402	0.82[AFR][1000 genomes]
rs35098388	1.00[EUR][1000 genomes]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs699141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123549	1.00[EUR][1000 genomes]
rs826032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826046	0.87[AFR][1000 genomes]
rs826047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826049	0.87[AFR][1000 genomes]
rs826052	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826080	1.00[EUR][1000 genomes]
rs826086	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826090	0.84[AFR][1000 genomes]
rs826091	1.00[EUR][1000 genomes]
rs861144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv3400599	chr11:73773004-73777202	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:73750800-73800400	Weak transcription	HMEC	breast
4	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:73753200-73778200	Weak transcription	Pancreas	Pancrea
7	chr11:73753200-73781600	Weak transcription	Fetal Kidney	kidney
8	chr11:73753200-73782000	Weak transcription	Fetal Brain Male	brain
9	chr11:73753200-73783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:73753200-73783400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
12	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
13	chr11:73753400-73781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:73753400-73784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:73758400-73782800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:73758800-73779400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:73759000-73783400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:73759200-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:73759400-73780600	Weak transcription	Brain Germinal Matrix	brain
20	chr11:73759400-73781400	Weak transcription	Spleen	Spleen
21	chr11:73759400-73783600	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:73760000-73780200	Weak transcription	Fetal Intestine Large	intestine
23	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:73760200-73780600	Weak transcription	Hela-S3	cervix
25	chr11:73760600-73783200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:73760600-73785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:73760800-73779400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:73760800-73780600	Weak transcription	Right Ventricle	heart
29	chr11:73760800-73781200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:73760800-73782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:73761000-73779200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:73761000-73779400	Weak transcription	Gastric	stomach
33	chr11:73761000-73781600	Weak transcription	Brain Anterior Caudate	brain
34	chr11:73762000-73780400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:73764000-73781400	Weak transcription	Brain Angular Gyrus	brain
36	chr11:73765000-73778800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:73765000-73779400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:73765000-73780000	Weak transcription	Adipose Nuclei	Adipose
39	chr11:73765000-73781400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:73765000-73781800	Weak transcription	Brain Substantia Nigra	brain
41	chr11:73765400-73778800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:73765400-73784000	Weak transcription	Fetal Intestine Small	intestine
43	chr11:73765600-73781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:73766800-73779200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:73767200-73781200	Weak transcription	Liver	Liver
46	chr11:73767600-73777400	Weak transcription	HepG2	liver
47	chr11:73767600-73779000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:73767600-73781600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:73767600-73783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:73767800-73779400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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