Variant report

Variant	rs1622307
Chromosome Location	chr11:73738284-73738285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73692646..73695519-chr11:73738092..73741151,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1095419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095421	1.00[AMR][1000 genomes]
rs1095428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235981	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275089	1.00[EUR][1000 genomes]
rs12277116	1.00[AMR][1000 genomes]
rs12277407	1.00[AMR][1000 genomes]
rs12280063	1.00[EUR][1000 genomes]
rs12287317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295243	1.00[AMR][1000 genomes]
rs1320428	1.00[EUR][1000 genomes]
rs1320429	1.00[EUR][1000 genomes]
rs1617256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618253	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685337	1.00[EUR][1000 genomes]
rs1685341	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1685343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726753	1.00[EUR][1000 genomes]
rs1726754	1.00[EUR][1000 genomes]
rs1726757	1.00[EUR][1000 genomes]
rs1726758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726760	1.00[EUR][1000 genomes]
rs1726761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1726765	1.00[EUR][1000 genomes]
rs1726767	1.00[EUR][1000 genomes]
rs1726768	1.00[EUR][1000 genomes]
rs1790392	1.00[AMR][1000 genomes]
rs1790393	1.00[AMR][1000 genomes]
rs36207715	1.00[EUR][1000 genomes]
rs699140	1.00[EUR][1000 genomes]
rs699141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123549	1.00[EUR][1000 genomes]
rs826032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826053	0.91[AMR][1000 genomes]
rs826059	1.00[AMR][1000 genomes]
rs826063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826067	1.00[AMR][1000 genomes]
rs826068	1.00[AMR][1000 genomes]
rs826069	1.00[AMR][1000 genomes]
rs826070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826080	1.00[EUR][1000 genomes]
rs826086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826091	1.00[EUR][1000 genomes]
rs861144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941250	1.00[EUR][1000 genomes]
rs941253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv976527	chr11:73728292-73738902	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
13	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:73728400-73738400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:73728600-73738600	Weak transcription	Dnd41	blood
16	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:73729200-73740000	Weak transcription	Fetal Lung	lung
18	chr11:73730400-73738400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:73730600-73741400	Weak transcription	Hela-S3	cervix
20	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
24	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus
25	chr11:73731200-73743800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:73731200-73744800	Weak transcription	HepG2	liver
27	chr11:73731400-73739000	Weak transcription	Pancreas	Pancrea
28	chr11:73731400-73741400	Weak transcription	Brain Angular Gyrus	brain
29	chr11:73731400-73741400	Weak transcription	Gastric	stomach
30	chr11:73731400-73743800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:73731400-73744000	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:73731800-73738600	Weak transcription	Right Atrium	heart
34	chr11:73731800-73740000	Weak transcription	Right Ventricle	heart
35	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
36	chr11:73732200-73739000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:73732200-73741600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:73732200-73744000	Weak transcription	Colonic Mucosa	Colon
39	chr11:73732600-73741400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:73733600-73740000	Weak transcription	Brain Anterior Caudate	brain
41	chr11:73734000-73741400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:73734000-73743000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:73734400-73743600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr11:73735000-73738400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:73735000-73738600	Enhancers	HUVEC	blood vessel
47	chr11:73735400-73738400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:73735400-73738400	Enhancers	HMEC	breast
49	chr11:73735400-73738400	Enhancers	NHLF	lung
50	chr11:73735600-73742400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links