Variant report

Variant	rs1790402
Chromosome Location	chr11:73818999-73819000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73677358..73679937-chr11:73818176..73820385,2	MCF-7	breast:
2	chr11:73816999..73819163-chr11:73819784..73821810,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UCP3-8	chr11:73818921-73819188	NONHSAT022879

Variant related genes	Relation type
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1095419	0.92[AFR][1000 genomes]
rs1095420	0.92[AFR][1000 genomes]
rs1095421	0.95[AFR][1000 genomes]
rs1095423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1095428	0.89[AFR][1000 genomes]
rs12285706	0.81[AFR][1000 genomes]
rs12286971	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12287317	0.82[AFR][1000 genomes]
rs1632245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1685342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726742	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726756	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790383	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28604496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2950412	0.81[AFR][1000 genomes]
rs826032	0.92[AFR][1000 genomes]
rs826034	0.92[AFR][1000 genomes]
rs826036	0.92[AFR][1000 genomes]
rs826037	0.94[AFR][1000 genomes]
rs826038	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826040	0.92[AFR][1000 genomes]
rs826041	0.92[AFR][1000 genomes]
rs826043	0.92[AFR][1000 genomes]
rs826045	0.92[AFR][1000 genomes]
rs826046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826047	0.92[AFR][1000 genomes]
rs826049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826052	0.92[AFR][1000 genomes]
rs826053	0.92[AFR][1000 genomes]
rs826074	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826077	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs826086	0.89[AFR][1000 genomes]
rs826088	0.89[AFR][1000 genomes]
rs826090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs861144	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
2	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73794600-73823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73795200-73820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:73795200-73823800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:73801600-73823600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:73802000-73831800	Weak transcription	Pancreas	Pancrea
9	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
10	chr11:73802400-73832000	Weak transcription	Fetal Heart	heart
11	chr11:73804000-73832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
13	chr11:73805000-73823600	Weak transcription	Colonic Mucosa	Colon
14	chr11:73808800-73823600	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:73809800-73844400	Weak transcription	HMEC	breast
16	chr11:73809800-73847200	Weak transcription	HepG2	liver
17	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:73812400-73819200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:73812800-73820400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:73814600-73823800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
22	chr11:73814800-73823800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:73814800-73824800	Weak transcription	Fetal Brain Male	brain
24	chr11:73815000-73823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:73815000-73824800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:73815400-73834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:73816200-73822400	Strong transcription	HSMMtube	muscle
28	chr11:73816400-73820400	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:73816800-73840000	Weak transcription	Fetal Intestine Small	intestine
30	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:73817000-73823000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:73817200-73823600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
34	chr11:73817400-73821800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:73817400-73823600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:73817400-73823600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:73817400-73823600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:73817400-73823600	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:73817400-73823600	Weak transcription	Fetal Brain Female	brain
40	chr11:73817400-73823600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr11:73817400-73823800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:73817400-73823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:73817400-73823800	Weak transcription	Ovary	ovary
44	chr11:73817400-73823800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:73817400-73823800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:73817400-73823800	Weak transcription	K562	blood
47	chr11:73817400-73824000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:73817400-73824000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:73817400-73826800	Weak transcription	Small Intestine	intestine
50	chr11:73817400-73828600	Weak transcription	Right Ventricle	heart

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