Variant report

Variant	rs826075
Chromosome Location	chr11:73752791-73752792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73751293..73752862-chr11:73761257..73763074,2	MCF-7	breast:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10219224	1.00[CEU][hapmap]
rs10488770	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs10501413	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10501414	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1055178	1.00[ASN][1000 genomes]
rs10898954	0.86[YRI][hapmap]
rs1095427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1103886	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235973	1.00[CEU][hapmap]
rs11235979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235981	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235982	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235989	1.00[AMR][1000 genomes]
rs11825062	1.00[AMR][1000 genomes]
rs12277116	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277407	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277532	0.88[AMR][1000 genomes]
rs12280063	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12286033	1.00[CEU][hapmap]
rs12291090	0.86[ASN][1000 genomes]
rs12291461	1.00[GIH][hapmap]
rs12295243	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794753	0.86[ASN][1000 genomes]
rs1618727	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1685340	1.00[CEU][hapmap]
rs1685343	1.00[GIH][hapmap]
rs17132567	1.00[CEU][hapmap]
rs17132602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132632	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs17132721	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132796	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132801	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132818	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132826	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132846	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132864	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132870	0.86[ASN][1000 genomes]
rs17132882	0.86[ASN][1000 genomes]
rs17160052	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1726759	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1726760	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1726761	1.00[GIH][hapmap]
rs1790392	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790393	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154971	0.86[ASN][1000 genomes]
rs2186561	0.86[ASN][1000 genomes]
rs2272321	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34895949	0.86[ASN][1000 genomes]
rs3897548	0.86[ASN][1000 genomes]
rs4453265	0.86[YRI][hapmap]
rs4489773	0.86[ASN][1000 genomes]
rs4575301	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55793503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814391	0.86[ASN][1000 genomes]
rs56142225	0.86[ASN][1000 genomes]
rs56171120	0.86[ASN][1000 genomes]
rs56343229	0.86[ASN][1000 genomes]
rs56808069	0.86[ASN][1000 genomes]
rs56984031	0.86[ASN][1000 genomes]
rs57115412	0.86[ASN][1000 genomes]
rs57384187	0.86[ASN][1000 genomes]
rs57393325	0.86[ASN][1000 genomes]
rs57642592	0.86[ASN][1000 genomes]
rs58102808	0.86[ASN][1000 genomes]
rs58421256	0.86[ASN][1000 genomes]
rs58727177	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58898896	0.86[ASN][1000 genomes]
rs60044681	0.86[ASN][1000 genomes]
rs60206858	0.86[ASN][1000 genomes]
rs60218608	0.86[ASN][1000 genomes]
rs60219367	0.86[ASN][1000 genomes]
rs60636561	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60759798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60981452	0.86[ASN][1000 genomes]
rs61132076	0.86[ASN][1000 genomes]
rs6592545	0.86[YRI][hapmap]
rs6592549	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6592550	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs7106817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7107268	0.86[ASN][1000 genomes]
rs7110062	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7113898	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7117091	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs7117831	1.00[MEX][hapmap]
rs7120494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7126381	1.00[CEU][hapmap]
rs7126696	0.86[ASN][1000 genomes]
rs7127358	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs7129659	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs7129774	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs7130095	1.00[MEX][hapmap]
rs73549014	0.86[ASN][1000 genomes]
rs73549059	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73549071	0.86[ASN][1000 genomes]
rs73552741	0.94[AMR][1000 genomes]
rs73552745	0.82[AMR][1000 genomes]
rs73555974	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73561882	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73561885	0.86[ASN][1000 genomes]
rs73565826	0.86[ASN][1000 genomes]
rs73565828	0.86[ASN][1000 genomes]
rs73565829	0.86[ASN][1000 genomes]
rs73565839	0.86[ASN][1000 genomes]
rs73565840	0.86[ASN][1000 genomes]
rs73565842	0.86[ASN][1000 genomes]
rs7924965	0.86[ASN][1000 genomes]
rs7925320	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7925695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7926891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7943916	0.86[ASN][1000 genomes]
rs7947458	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826042	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs826047	1.00[GIH][hapmap]
rs826048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826051	1.00[AMR][1000 genomes]
rs826059	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826063	1.00[GIH][hapmap]
rs826065	1.00[GIH][hapmap]
rs826068	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826069	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826079	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs826081	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs826082	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs826085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826086	1.00[GIH][hapmap]
rs826087	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs826088	1.00[GIH][hapmap]
rs826089	0.94[AMR][1000 genomes]
rs826091	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs947840	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
4	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:73737000-73753400	Strong transcription	Fetal Muscle Trunk	muscle
6	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
7	chr11:73738600-73753200	Strong transcription	Fetal Intestine Large	intestine
8	chr11:73738600-73754600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:73738600-73754600	Strong transcription	Dnd41	blood
10	chr11:73738600-73754800	Strong transcription	Stomach Smooth Muscle	stomach
11	chr11:73738800-73753200	Strong transcription	Brain Germinal Matrix	brain
12	chr11:73738800-73753400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:73739000-73753600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:73739000-73753600	Strong transcription	HSMMtube	muscle
15	chr11:73739200-73753600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:73739600-73753200	Strong transcription	Thymus	Thymus
17	chr11:73739600-73753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:73740000-73753200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:73740000-73753400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:73740200-73753400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:73740600-73753400	Strong transcription	Ovary	ovary
23	chr11:73741400-73753200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr11:73741400-73753200	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:73742600-73753600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:73742600-73758000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:73742800-73753200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:73742800-73754600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:73743000-73753200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:73743000-73755200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:73743200-73753000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:73743400-73754400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:73743600-73753200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:73744600-73753200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr11:73745000-73758200	Weak transcription	NHDF-Ad	bronchial
36	chr11:73745400-73758200	Weak transcription	Esophagus	oesophagus
37	chr11:73745400-73764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:73746000-73768000	Weak transcription	NHEK	skin
39	chr11:73746200-73753200	Strong transcription	Aorta	Aorta
40	chr11:73746400-73766000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:73746800-73753400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:73747000-73767000	Weak transcription	HepG2	liver
43	chr11:73748400-73753800	Strong transcription	Fetal Stomach	stomach
44	chr11:73748600-73753600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:73749200-73753200	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr11:73749600-73753200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:73749800-73753200	Strong transcription	Spleen	Spleen
48	chr11:73750200-73753200	Strong transcription	Lung	lung
49	chr11:73750200-73753600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:73750400-73759600	Weak transcription	Muscle Satellite Cultured Cells	--

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