Variant report

Variant	rs10219224
Chromosome Location	chr11:73718830-73718831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73693159..73695424-chr11:73716966..73719233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10501413	1.00[CEU][hapmap]
rs10501414	1.00[CEU][hapmap]
rs11235973	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282836	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12286033	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1685340	1.00[CEU][hapmap]
rs17132567	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132610	1.00[CEU][hapmap]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap]
rs17132629	1.00[CEU][hapmap]
rs17132632	1.00[CEU][hapmap]
rs17132796	1.00[CEU][hapmap]
rs17132801	1.00[CEU][hapmap]
rs17132816	1.00[CEU][hapmap]
rs17132818	1.00[CEU][hapmap]
rs17132826	1.00[CEU][hapmap]
rs1726759	1.00[CEU][hapmap]
rs2229707	1.00[EUR][1000 genomes]
rs7110062	1.00[CEU][hapmap]
rs7113898	1.00[CEU][hapmap]
rs7120494	1.00[CEU][hapmap]
rs7126381	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127358	1.00[CEU][hapmap]
rs7129659	1.00[CEU][hapmap]
rs7129774	1.00[CEU][hapmap]
rs73552738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826048	1.00[CEU][hapmap]
rs826071	1.00[CEU][hapmap]
rs826072	1.00[CEU][hapmap]
rs826073	1.00[CEU][hapmap]
rs826075	1.00[CEU][hapmap]
rs826079	1.00[CEU][hapmap]
rs826081	1.00[CEU][hapmap]
rs826082	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73703000-73719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73707400-73719800	Weak transcription	Dnd41	blood
3	chr11:73708800-73729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:73709000-73724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:73710200-73728400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
7	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
8	chr11:73710800-73722400	Weak transcription	NHDF-Ad	bronchial
9	chr11:73711000-73721200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:73711000-73729200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:73711800-73720200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:73711800-73729200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:73712000-73721200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:73712200-73721200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:73712200-73726800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:73712400-73721800	Weak transcription	Colonic Mucosa	Colon
19	chr11:73712600-73722400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:73713600-73725000	Weak transcription	A549	lung
22	chr11:73714000-73726000	Weak transcription	Esophagus	oesophagus
23	chr11:73714200-73729800	Weak transcription	Hela-S3	cervix
24	chr11:73714600-73727200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:73714800-73719200	Weak transcription	Fetal Heart	heart
26	chr11:73714800-73721400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:73714800-73721600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:73714800-73724000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:73715000-73722200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:73715000-73729800	Weak transcription	Ovary	ovary
31	chr11:73715200-73721000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73715200-73722000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:73715200-73722600	Weak transcription	NHLF	lung
34	chr11:73715200-73722800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:73715200-73727200	Weak transcription	Fetal Lung	lung
36	chr11:73715200-73727400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:73715400-73720400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:73715400-73721400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:73715400-73722600	Weak transcription	HSMMtube	muscle
40	chr11:73715400-73727400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:73715600-73719600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:73715600-73721200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:73715600-73722000	Weak transcription	HSMM	muscle
44	chr11:73716000-73723400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:73716200-73719000	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:73716200-73719600	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:73716200-73721000	Weak transcription	Brain Anterior Caudate	brain
48	chr11:73716200-73722400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:73716200-73722600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:73716200-73722800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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