Variant report

Variant	rs17132610
Chromosome Location	chr11:73745395-73745396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73681646..73684288-chr11:73745260..73748147,2	MCF-7	breast:
2	chr11:73693782..73695320-chr11:73743526..73745604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10219224	1.00[CEU][hapmap]
rs10488770	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs10501413	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10501414	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1055178	1.00[ASN][1000 genomes]
rs1095427	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1103886	0.87[EUR][1000 genomes]
rs11235973	1.00[CEU][hapmap]
rs11235979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235981	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235982	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277116	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277407	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286033	1.00[CEU][hapmap]
rs12291090	0.86[ASN][1000 genomes]
rs12295243	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794753	0.86[ASN][1000 genomes]
rs1685340	1.00[CEU][hapmap]
rs17132567	1.00[CEU][hapmap]
rs17132602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17132629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17132632	0.93[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[AMR][1000 genomes]
rs17132721	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132796	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132801	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132818	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132826	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132846	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132864	0.86[ASN][1000 genomes]
rs17132870	0.86[ASN][1000 genomes]
rs17132882	0.86[ASN][1000 genomes]
rs17160052	0.86[ASN][1000 genomes]
rs1726759	1.00[CEU][hapmap]
rs1790392	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790393	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154971	0.86[ASN][1000 genomes]
rs2186561	0.86[ASN][1000 genomes]
rs2272321	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34895949	0.86[ASN][1000 genomes]
rs3897548	0.86[ASN][1000 genomes]
rs4489773	0.86[ASN][1000 genomes]
rs4575301	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55793503	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814391	0.86[ASN][1000 genomes]
rs56142225	0.86[ASN][1000 genomes]
rs56171120	0.86[ASN][1000 genomes]
rs56343229	0.86[ASN][1000 genomes]
rs56808069	0.86[ASN][1000 genomes]
rs56984031	0.86[ASN][1000 genomes]
rs57115412	0.86[ASN][1000 genomes]
rs57384187	0.86[ASN][1000 genomes]
rs57393325	0.86[ASN][1000 genomes]
rs57642592	0.86[ASN][1000 genomes]
rs58102808	0.86[ASN][1000 genomes]
rs58421256	0.86[ASN][1000 genomes]
rs58727177	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58898896	0.86[ASN][1000 genomes]
rs60044681	0.86[ASN][1000 genomes]
rs60206858	0.86[ASN][1000 genomes]
rs60218608	0.86[ASN][1000 genomes]
rs60219367	0.86[ASN][1000 genomes]
rs60636561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60759798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60981452	0.86[ASN][1000 genomes]
rs61132076	0.86[ASN][1000 genomes]
rs6592549	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6592550	0.86[ASN][1000 genomes]
rs7102679	0.84[YRI][hapmap]
rs7106817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7107268	0.86[ASN][1000 genomes]
rs7110062	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7113898	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7117831	0.87[ASW][hapmap]
rs7120494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7123549	0.83[AMR][1000 genomes]
rs7126381	1.00[CEU][hapmap]
rs7126696	0.86[ASN][1000 genomes]
rs7127358	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs7129659	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs7129774	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs73549014	0.86[ASN][1000 genomes]
rs73549059	0.86[ASN][1000 genomes]
rs73555974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73561882	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73561885	0.86[ASN][1000 genomes]
rs73565826	0.86[ASN][1000 genomes]
rs73565828	0.86[ASN][1000 genomes]
rs73565829	0.86[ASN][1000 genomes]
rs73565839	0.86[ASN][1000 genomes]
rs73565840	0.86[ASN][1000 genomes]
rs73565842	0.86[ASN][1000 genomes]
rs7924965	0.86[ASN][1000 genomes]
rs7925320	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7925695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7926891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7943916	0.86[ASN][1000 genomes]
rs7947458	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826059	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826068	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826069	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826079	1.00[CEU][hapmap]
rs826081	1.00[CEU][hapmap]
rs826082	1.00[CEU][hapmap]
rs826085	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947840	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
2	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
7	chr11:73731400-73750800	Strong transcription	Fetal Muscle Leg	muscle
8	chr11:73732000-73752400	Weak transcription	Small Intestine	intestine
9	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:73735800-73745400	Strong transcription	Fetal Stomach	stomach
11	chr11:73736200-73751200	Strong transcription	Fetal Thymus	thymus
12	chr11:73736800-73747800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:73737000-73745400	Strong transcription	Fetal Intestine Small	intestine
14	chr11:73737000-73753400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
16	chr11:73738400-73746600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr11:73738400-73750800	Strong transcription	Fetal Brain Female	brain
18	chr11:73738600-73751000	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:73738600-73753200	Strong transcription	Fetal Intestine Large	intestine
20	chr11:73738600-73754600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:73738600-73754600	Strong transcription	Dnd41	blood
22	chr11:73738600-73754800	Strong transcription	Stomach Smooth Muscle	stomach
23	chr11:73738800-73748000	Strong transcription	Brain Cingulate Gyrus	brain
24	chr11:73738800-73748600	Strong transcription	Brain Hippocampus Middle	brain
25	chr11:73738800-73749200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:73738800-73751200	Strong transcription	Placenta	Placenta
27	chr11:73738800-73753200	Strong transcription	Brain Germinal Matrix	brain
28	chr11:73738800-73753400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:73739000-73745400	Strong transcription	Spleen	Spleen
30	chr11:73739000-73751400	Strong transcription	Left Ventricle	heart
31	chr11:73739000-73753600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:73739000-73753600	Strong transcription	HSMMtube	muscle
33	chr11:73739200-73745400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:73739200-73753600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:73739600-73753200	Strong transcription	Thymus	Thymus
36	chr11:73739600-73753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:73739800-73745800	Strong transcription	A549	lung
38	chr11:73739800-73748400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:73739800-73750800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:73740000-73746000	Strong transcription	Fetal Lung	lung
41	chr11:73740000-73748400	Strong transcription	Brain Anterior Caudate	brain
42	chr11:73740000-73753200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:73740000-73753400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:73740200-73753400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:73740600-73745400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:73740600-73753400	Strong transcription	Ovary	ovary
48	chr11:73741200-73745400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:73741200-73745400	Strong transcription	Aorta	Aorta
50	chr11:73741400-73745400	Strong transcription	Gastric	stomach

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