Variant report

Variant	rs1095427
Chromosome Location	chr11:73756189-73756190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1055178	0.87[ASN][1000 genomes]
rs1103886	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235979	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235981	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235982	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235989	1.00[AMR][1000 genomes]
rs11825062	1.00[AMR][1000 genomes]
rs12277116	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12277407	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12277532	0.88[AMR][1000 genomes]
rs12295243	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132602	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132610	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132620	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132629	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1726759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1790392	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1790393	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2272321	0.87[ASN][1000 genomes]
rs55793503	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58727177	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60636561	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60759798	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7117091	0.82[AMR][1000 genomes]
rs7120494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73549059	0.87[EUR][1000 genomes]
rs73552741	0.94[AMR][1000 genomes]
rs73552745	0.82[AMR][1000 genomes]
rs73555974	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73555986	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73557906	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73561882	0.80[EUR][1000 genomes]
rs826042	1.00[AMR][1000 genomes]
rs826048	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826051	1.00[AMR][1000 genomes]
rs826059	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826068	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826069	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826073	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826079	0.88[AMR][1000 genomes]
rs826081	0.89[AMR][1000 genomes]
rs826082	0.89[AMR][1000 genomes]
rs826085	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826087	1.00[AMR][1000 genomes]
rs826089	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
3	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
4	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73742600-73758000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:73745000-73758200	Weak transcription	NHDF-Ad	bronchial
7	chr11:73745400-73758200	Weak transcription	Esophagus	oesophagus
8	chr11:73745400-73764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:73746000-73768000	Weak transcription	NHEK	skin
10	chr11:73746400-73766000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:73747000-73767000	Weak transcription	HepG2	liver
12	chr11:73750400-73759600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:73750600-73758800	Weak transcription	HUVEC	blood vessel
14	chr11:73750800-73756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:73750800-73800400	Weak transcription	HMEC	breast
17	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:73752000-73758600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:73752800-73758800	Weak transcription	Fetal Lung	lung
20	chr11:73753000-73756400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:73753000-73757400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:73753000-73758000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:73753000-73758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:73753000-73770400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:73753200-73756800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:73753200-73757000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:73753200-73757000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:73753200-73757200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:73753200-73757400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:73753200-73757600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:73753200-73757800	Weak transcription	Fetal Intestine Large	intestine
33	chr11:73753200-73757800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:73753200-73757800	Weak transcription	Hela-S3	cervix
35	chr11:73753200-73757800	Weak transcription	Osteobl	bone
36	chr11:73753200-73758000	Weak transcription	Liver	Liver
37	chr11:73753200-73758000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:73753200-73758000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:73753200-73758000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:73753200-73758000	Weak transcription	Thymus	Thymus
41	chr11:73753200-73758000	Weak transcription	Spleen	Spleen
42	chr11:73753200-73758200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:73753200-73758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:73753200-73758200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:73753200-73758200	Weak transcription	Aorta	Aorta
46	chr11:73753200-73758200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:73753200-73758200	Weak transcription	Brain Germinal Matrix	brain
48	chr11:73753200-73758200	Weak transcription	Fetal Brain Female	brain
49	chr11:73753200-73758200	Weak transcription	Gastric	stomach
50	chr11:73753200-73758200	Weak transcription	Lung	lung

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