Variant report

Variant	rs60206858
Chromosome Location	chr11:73939664-73939665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73679655..73681254-chr11:73938042..73940266,2	MCF-7	breast:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10488770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488771	1.00[ASN][1000 genomes]
rs10501413	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501414	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055178	0.86[ASN][1000 genomes]
rs11235979	0.86[ASN][1000 genomes]
rs11235981	0.86[ASN][1000 genomes]
rs11235982	0.86[ASN][1000 genomes]
rs12277116	0.86[ASN][1000 genomes]
rs12277407	0.86[ASN][1000 genomes]
rs12291090	1.00[ASN][1000 genomes]
rs12295243	0.86[ASN][1000 genomes]
rs12421228	0.86[ASN][1000 genomes]
rs12794753	1.00[ASN][1000 genomes]
rs17132602	0.86[ASN][1000 genomes]
rs17132610	0.86[ASN][1000 genomes]
rs17132620	0.86[ASN][1000 genomes]
rs17132629	0.86[ASN][1000 genomes]
rs17132721	1.00[ASN][1000 genomes]
rs17132796	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132801	1.00[ASN][1000 genomes]
rs17132816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132837	0.99[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132855	1.00[ASN][1000 genomes]
rs17132864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132870	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17132881	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132882	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132891	1.00[ASN][1000 genomes]
rs17132911	0.86[ASN][1000 genomes]
rs17132914	1.00[ASN][1000 genomes]
rs17132921	1.00[ASN][1000 genomes]
rs17132931	1.00[ASN][1000 genomes]
rs17132947	1.00[ASN][1000 genomes]
rs17132965	1.00[ASN][1000 genomes]
rs17160052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790392	0.86[ASN][1000 genomes]
rs1790393	0.86[ASN][1000 genomes]
rs2154971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272321	0.86[ASN][1000 genomes]
rs34895949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3897548	1.00[ASN][1000 genomes]
rs4121666	1.00[ASN][1000 genomes]
rs41349744	1.00[ASN][1000 genomes]
rs4489773	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793503	0.86[ASN][1000 genomes]
rs55814391	1.00[ASN][1000 genomes]
rs56142225	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56295430	0.86[ASN][1000 genomes]
rs56343229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56808069	1.00[ASN][1000 genomes]
rs56984031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57115412	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57384187	1.00[ASN][1000 genomes]
rs57393325	1.00[ASN][1000 genomes]
rs57642592	1.00[ASN][1000 genomes]
rs58102808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58421256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58727177	0.86[ASN][1000 genomes]
rs58898896	1.00[ASN][1000 genomes]
rs60044681	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60218608	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60219367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60636561	0.86[ASN][1000 genomes]
rs60759798	0.86[ASN][1000 genomes]
rs60981452	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61132076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592549	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107268	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110062	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113898	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126696	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129659	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129774	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549014	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549059	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73549071	1.00[ASN][1000 genomes]
rs73550730	1.00[ASN][1000 genomes]
rs73550751	1.00[ASN][1000 genomes]
rs73550754	1.00[ASN][1000 genomes]
rs73550755	1.00[ASN][1000 genomes]
rs73550761	1.00[ASN][1000 genomes]
rs73550769	0.86[ASN][1000 genomes]
rs73550772	1.00[ASN][1000 genomes]
rs73555974	0.86[ASN][1000 genomes]
rs73555986	0.86[ASN][1000 genomes]
rs73557906	0.86[ASN][1000 genomes]
rs73561882	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73561885	1.00[ASN][1000 genomes]
rs73565826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565828	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924965	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925695	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943916	1.00[ASN][1000 genomes]
rs7947458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826048	0.86[ASN][1000 genomes]
rs826059	0.86[ASN][1000 genomes]
rs826068	0.86[ASN][1000 genomes]
rs826069	0.86[ASN][1000 genomes]
rs826071	0.86[ASN][1000 genomes]
rs826072	0.86[ASN][1000 genomes]
rs826073	0.86[ASN][1000 genomes]
rs826075	0.86[ASN][1000 genomes]
rs826085	0.86[ASN][1000 genomes]
rs947840	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73884200-73941200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:73884200-73941800	Weak transcription	Small Intestine	intestine
3	chr11:73885600-73957000	Weak transcription	Fetal Brain Male	brain
4	chr11:73885800-73942400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:73902600-73941200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73905200-73941800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:73907400-73941200	Weak transcription	NHDF-Ad	bronchial
8	chr11:73907400-73969200	Weak transcription	HUVEC	blood vessel
9	chr11:73913200-73941200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:73913600-73946800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:73913800-73961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73915600-73941200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:73915600-73960600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:73916000-73957000	Weak transcription	NHLF	lung
15	chr11:73916800-73939800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:73918000-73942000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:73918200-73942400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:73920800-73941200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:73921600-73941200	Weak transcription	Osteobl	bone
20	chr11:73921800-73941200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:73921800-73941200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:73921800-73942400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:73921800-73949800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:73921800-73950200	Weak transcription	Fetal Kidney	kidney
25	chr11:73921800-73957200	Weak transcription	Pancreas	Pancrea
26	chr11:73921800-73962000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:73922000-73941000	Weak transcription	HMEC	breast
28	chr11:73922000-73941800	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:73922200-73941000	Weak transcription	HepG2	liver
30	chr11:73922200-73941200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:73922600-73941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:73924200-73941000	Weak transcription	Brain Anterior Caudate	brain
33	chr11:73924200-73941200	Weak transcription	Lung	lung
34	chr11:73924400-73941000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:73924400-73941000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:73924400-73941400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:73924400-73943200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:73924600-73940800	Weak transcription	NHEK	skin
39	chr11:73924600-73941000	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:73924600-73941000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:73924600-73941200	Weak transcription	Brain Angular Gyrus	brain
42	chr11:73924600-73942000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:73924600-73946400	Weak transcription	Right Ventricle	heart
44	chr11:73924800-73941000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:73924800-73941000	Weak transcription	Adipose Nuclei	Adipose
46	chr11:73924800-73941200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:73924800-73941200	Weak transcription	Brain Substantia Nigra	brain
48	chr11:73924800-73941200	Weak transcription	Colonic Mucosa	Colon
49	chr11:73924800-73941200	Weak transcription	Placenta	Placenta
50	chr11:73924800-73941200	Weak transcription	Thymus	Thymus

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