Variant report

Variant	rs17132855
Chromosome Location	chr11:73941229-73941230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:73941211-73941686	HepG2	liver:	n/a	chr11:73941338-73941353

Variant related genes	Relation type
PPME1	TF binding region

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10488770	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10488771	1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501413	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10501414	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1055178	0.86[ASN][1000 genomes]
rs11235979	0.86[ASN][1000 genomes]
rs11235981	0.86[ASN][1000 genomes]
rs11235982	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11823967	1.00[CEU][hapmap]
rs12277116	0.86[ASN][1000 genomes]
rs12277407	0.86[ASN][1000 genomes]
rs12291090	1.00[ASN][1000 genomes]
rs12295243	0.86[ASN][1000 genomes]
rs12421228	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12794753	1.00[ASN][1000 genomes]
rs17132602	0.86[ASN][1000 genomes]
rs17132610	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132617	1.00[CEU][hapmap]
rs17132620	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132629	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132632	1.00[CEU][hapmap]
rs17132721	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132796	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132801	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132816	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132818	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132826	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132836	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132837	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132846	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132864	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132870	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132881	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17132882	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17132891	1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132911	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17132914	1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132921	1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132931	1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132947	1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132965	1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132991	1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs17133043	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs17160052	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1790392	0.86[ASN][1000 genomes]
rs1790393	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2154971	1.00[ASN][1000 genomes]
rs2186561	1.00[ASN][1000 genomes]
rs2272321	1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs34895949	1.00[ASN][1000 genomes]
rs3897548	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4121666	1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41349744	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4489773	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4575301	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs512641	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs520523	1.00[CEU][hapmap]
rs528900	1.00[CEU][hapmap]
rs531902	1.00[CEU][hapmap]
rs55793503	0.86[ASN][1000 genomes]
rs55814391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560814	1.00[CEU][hapmap]
rs56142225	1.00[ASN][1000 genomes]
rs56171120	1.00[ASN][1000 genomes]
rs56295430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56343229	1.00[ASN][1000 genomes]
rs56808069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56984031	1.00[ASN][1000 genomes]
rs57115412	1.00[ASN][1000 genomes]
rs57384187	1.00[ASN][1000 genomes]
rs57393325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57642592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102808	1.00[ASN][1000 genomes]
rs58421256	1.00[ASN][1000 genomes]
rs58727177	0.86[ASN][1000 genomes]
rs58898896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600145	1.00[CEU][hapmap]
rs60044681	1.00[ASN][1000 genomes]
rs60155023	0.84[EUR][1000 genomes]
rs60206858	1.00[ASN][1000 genomes]
rs60218608	1.00[ASN][1000 genomes]
rs60219367	1.00[ASN][1000 genomes]
rs60636561	0.86[ASN][1000 genomes]
rs60759798	0.86[ASN][1000 genomes]
rs60981452	1.00[ASN][1000 genomes]
rs61132076	1.00[ASN][1000 genomes]
rs644421	1.00[CEU][hapmap]
rs6592549	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6592550	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs670974	1.00[CEU][hapmap]
rs7106817	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7107268	1.00[ASN][1000 genomes]
rs7110062	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7113898	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7126696	1.00[ASN][1000 genomes]
rs7127358	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129659	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129774	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73549014	1.00[ASN][1000 genomes]
rs73549059	1.00[ASN][1000 genomes]
rs73549071	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550730	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550751	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550754	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550755	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550761	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550769	0.86[ASN][1000 genomes]
rs73550772	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555974	0.86[ASN][1000 genomes]
rs73555986	0.86[ASN][1000 genomes]
rs73557906	0.86[ASN][1000 genomes]
rs73561882	1.00[ASN][1000 genomes]
rs73561885	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565826	1.00[ASN][1000 genomes]
rs73565828	1.00[ASN][1000 genomes]
rs73565829	1.00[ASN][1000 genomes]
rs73565839	1.00[ASN][1000 genomes]
rs73565840	1.00[ASN][1000 genomes]
rs73565842	1.00[ASN][1000 genomes]
rs7924965	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7925320	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7925695	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7926891	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7943916	1.00[ASN][1000 genomes]
rs7947458	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs826048	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826059	0.86[ASN][1000 genomes]
rs826068	0.86[ASN][1000 genomes]
rs826069	0.86[ASN][1000 genomes]
rs826071	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826072	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826073	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826075	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs826085	0.86[ASN][1000 genomes]
rs947840	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73884200-73941800	Weak transcription	Small Intestine	intestine
2	chr11:73885600-73957000	Weak transcription	Fetal Brain Male	brain
3	chr11:73885800-73942400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73905200-73941800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:73907400-73969200	Weak transcription	HUVEC	blood vessel
6	chr11:73913600-73946800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:73913800-73961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:73915600-73960600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:73916000-73957000	Weak transcription	NHLF	lung
10	chr11:73918000-73942000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:73918200-73942400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:73921800-73942400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:73921800-73949800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:73921800-73950200	Weak transcription	Fetal Kidney	kidney
15	chr11:73921800-73957200	Weak transcription	Pancreas	Pancrea
16	chr11:73921800-73962000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:73922000-73941800	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:73924400-73941400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:73924400-73943200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:73924600-73942000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:73924600-73946400	Weak transcription	Right Ventricle	heart
22	chr11:73924800-73941600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:73924800-73941800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:73924800-73941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:73924800-73942600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:73924800-73950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:73924800-73959000	Weak transcription	Aorta	Aorta
28	chr11:73925000-73941800	Weak transcription	Fetal Stomach	stomach
29	chr11:73925000-73946200	Weak transcription	Gastric	stomach
30	chr11:73925400-73945400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:73926400-73959000	Weak transcription	Esophagus	oesophagus
32	chr11:73926400-73961800	Weak transcription	Fetal Intestine Small	intestine
33	chr11:73926600-73941600	Weak transcription	Brain Germinal Matrix	brain
34	chr11:73934000-73941800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:73936000-73968000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:73936200-73966600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:73936400-73967000	Strong transcription	HSMM	muscle
38	chr11:73936400-73967600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:73937200-73942400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:73937400-73961800	Weak transcription	Spleen	Spleen
41	chr11:73937800-73953000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:73938200-73941800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:73938400-73957000	Weak transcription	Psoas Muscle	Psoas
44	chr11:73938800-73967400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr11:73939600-73943200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:73939600-73945400	Strong transcription	A549	lung
47	chr11:73939800-73948200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:73940000-73941400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:73940000-73942400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:73940200-73948800	Weak transcription	Fetal Heart	heart

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