Variant report

Variant	rs56101908
Chromosome Location	chr14:106071739-106071740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56178366	1.00[EUR][1000 genomes]
rs58220312	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60359979	0.89[ASN][1000 genomes]
rs60886668	1.00[EUR][1000 genomes]
rs61737468	1.00[EUR][1000 genomes]
rs61737471	0.89[ASN][1000 genomes]
rs7150801	1.00[EUR][1000 genomes]
rs74091262	0.92[ASN][1000 genomes]
rs74091265	0.94[ASN][1000 genomes]
rs74091269	0.94[ASN][1000 genomes]
rs74091270	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091956	1.00[EUR][1000 genomes]
rs74091958	1.00[EUR][1000 genomes]
rs8010601	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8017345	1.00[EUR][1000 genomes]
rs8020782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106070200-106072600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:106070800-106072400	Enhancers	Placenta	Placenta
3	chr14:106070800-106073400	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:106071000-106073000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:106071200-106072000	Enhancers	Primary B cells from cord blood	blood
6	chr14:106071200-106072800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:106071600-106071800	Active TSS	Spleen	Spleen
8	chr14:106071600-106072800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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