Variant report

Variant	rs61737468
Chromosome Location	chr14:106067472-106067473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106063292-106070062	GM12892	blood:	n/a	n/a
2	POLR2A	chr14:106067188-106067627	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:106067450-106067500	SK-N-SH	brain:	n/a
2	chr14:106067450-106067500	HepG2	liver:	n/a
3	chr14:106067450-106067500	HPAEpiC	pulmonary alveolar:	n/a
4	chr14:106067450-106067500	CMK	blood:	n/a
5	chr14:106067450-106067500	HCM	heart:	n/a
6	chr14:106067450-106067500	H1-hESC	embryonic stem cell:	embryo
7	chr14:106067450-106067500	NH-A	brain:	n/a
8	chr14:106067450-106067500	Jurkat	blood:	n/a
9	chr14:106067450-106067500	HRE	kidney:	n/a
10	chr14:106067450-106067500	RPTEC	kidney:	n/a
11	chr14:106067450-106067500	PANC-1	pancreas:	n/a
12	chr14:106067450-106067500	ECC-1	luminal epithelium:	n/a
13	chr14:106067450-106067500	U87	brain:	n/a
14	chr14:106067450-106067500	LNCaP	prostate:	n/a
15	chr14:106067450-106067500	HEK293	kidney:	embryo
16	chr14:106067450-106067500	HAEpiC	amniotic membrane:	n/a
17	chr14:106067450-106067500	HUVEC	blood vessel:	n/a
18	chr14:106067450-106067500	ProgFib	skin:	n/a
19	chr14:106067450-106067500	AG10803	skin:	n/a
20	chr14:106067450-106067500	HRCEpiC	kidney:	n/a
21	chr14:106067450-106067500	NHBE	bronchial:	n/a
22	chr14:106067450-106067500	HRPEpiC	eye:	n/a
23	chr14:106067450-106067500	GM12892	blood:	n/a
24	chr14:106067450-106067500	HCF	heart:	n/a
25	chr14:106067450-106067500	HCPEpiC	choroid plexus:	n/a
26	chr14:106067450-106067500	NB4	blood:	n/a
27	chr14:106067450-106067500	AG04449	skin:	fetal
28	chr14:106067450-106067500	HCT-116	colon:	n/a
29	chr14:106067450-106067500	PFSK-1	brain:	n/a
30	chr14:106067450-106067500	MCF10A-Er-Src	breast:	n/a
31	chr14:106067450-106067500	GM12878	blood:	n/a
32	chr14:106067450-106067500	T-47D	breast:	n/a
33	chr14:106067450-106067500	AG09319	gingival:	n/a
34	chr14:106067450-106067500	Hela-S3	cervix:	n/a
35	chr14:106067450-106067500	MCF-7	breast:	n/a
36	chr14:106067450-106067500	AG09309	skin:	n/a
37	chr14:106067450-106067500	Caco-2	colon:	n/a
38	chr14:106067450-106067500	HL-60	blood:	n/a
39	chr14:106067450-106067500	HIPEpiC	eye:	n/a
40	chr14:106067450-106067500	BE2_C	brain:	n/a
41	chr14:106067450-106067500	PrEC	prostate:	n/a
42	chr14:106067450-106067500	GM06990	blood:	n/a
43	chr14:106067450-106067500	HEEpiC	esophagus:	n/a
44	chr14:106067450-106067500	NT2-D1	testis:	n/a
45	chr14:106067450-106067500	ovcar-3	ovarian:	n/a
46	chr14:106067450-106067500	NHDF-neo	bronchial:	n/a
47	chr14:106067450-106067500	IMR90	lung:	fetal
48	chr14:106067450-106067500	SK-N-MC	brain:	n/a
49	chr14:106067450-106067500	AG04450	lung:	fetal
50	chr14:106067450-106067500	K562	blood:	n/a

No data

Variant related genes	Relation type
IGHE	TF binding region
ENSG00000227468	TF binding region
ENSG00000227468	CpG island
IGHE	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56101908	1.00[EUR][1000 genomes]
rs56178366	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58220312	1.00[EUR][1000 genomes]
rs60886668	1.00[EUR][1000 genomes]
rs7150801	1.00[EUR][1000 genomes]
rs74090528	1.00[EUR][1000 genomes]
rs74091270	1.00[EUR][1000 genomes]
rs74091956	1.00[EUR][1000 genomes]
rs74091958	1.00[EUR][1000 genomes]
rs8010601	1.00[EUR][1000 genomes]
rs8017345	1.00[EUR][1000 genomes]
rs8020782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106058400-106067800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:106065400-106070200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:106066200-106070400	Enhancers	Placenta	Placenta
4	chr14:106067400-106067600	Flanking Active TSS	Spleen	Spleen

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