Variant report

Variant	rs561019980
Chromosome Location	chr15:58699048-58699049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FAM48A	chr15:58699023-58699157	GM12878	blood:	n/a	n/a
2	CTCF	chr15:58699020-58699170	GM12864	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:58684651..58686772-chr15:58697716..58700224,2	K562	blood:
2	chr15:58698100..58699843-chr15:58703706..58705363,2	K562	blood:
3	chr15:58623588..58626439-chr15:58697018..58699779,2	K562	blood:

Variant related genes	Relation type
LIPC	TF binding region
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58690800-58702400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:58694800-58702600	Weak transcription	HepG2	liver
3	chr15:58694800-58716000	Weak transcription	Esophagus	oesophagus
4	chr15:58695000-58699400	Weak transcription	Fetal Thymus	thymus
5	chr15:58697400-58701200	Weak transcription	K562	blood
6	chr15:58698200-58699600	Weak transcription	Right Atrium	heart
7	chr15:58698800-58700400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:58698800-58700600	Enhancers	Brain Substantia Nigra	brain
9	chr15:58699000-58699600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:58699000-58699800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:58699000-58699800	Enhancers	Brain Hippocampus Middle	brain
12	chr15:58699000-58700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr15:58699000-58700400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:58699000-58700400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:58699000-58700400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:58699000-58700400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:58699000-58700400	Enhancers	Brain Cingulate Gyrus	brain
18	chr15:58699000-58700400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr15:58699000-58700600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:58699000-58700600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:58699000-58700600	Enhancers	Brain Angular Gyrus	brain

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