Variant report

Variant	rs56110038
Chromosome Location	chr16:52148924-52148925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4785069	1.00[ASN][1000 genomes]
rs74020714	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74020721	1.00[ASN][1000 genomes]
rs74020722	1.00[ASN][1000 genomes]
rs74020723	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52146400-52149000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr16:52146400-52149000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr16:52147000-52149200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr16:52147200-52149800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr16:52147200-52150200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr16:52147200-52151400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:52147200-52152600	Weak transcription	Pancreas	Pancrea
8	chr16:52147400-52149000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:52147400-52149000	Enhancers	NHEK	skin
10	chr16:52147400-52149200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:52147400-52151600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:52147600-52149000	Enhancers	Hela-S3	cervix
13	chr16:52147600-52149200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr16:52147800-52152200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr16:52148000-52149000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr16:52148000-52150400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr16:52148400-52149000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:52148400-52150200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr16:52148600-52149000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr16:52148800-52151200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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