Variant report

Variant	rs74020714
Chromosome Location	chr16:52152185-52152186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4785069	1.00[ASN][1000 genomes]
rs56110038	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74020721	1.00[ASN][1000 genomes]
rs74020722	1.00[ASN][1000 genomes]
rs74020723	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52147200-52152600	Weak transcription	Pancreas	Pancrea
2	chr16:52147800-52152200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr16:52149000-52154400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:52150000-52152400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr16:52150200-52152200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr16:52150400-52152400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr16:52151000-52152200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr16:52151800-52152400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr16:52151800-52152600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:52151800-52152600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links