Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10278811	0.95[ASN][1000 genomes]
rs10487754	0.95[ASN][1000 genomes]
rs1686	0.80[ASN][1000 genomes]
rs17144729	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144731	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17144754	0.80[ASN][1000 genomes]
rs2159824	0.82[ASN][1000 genomes]
rs28540575	0.95[ASN][1000 genomes]
rs28642148	0.95[ASN][1000 genomes]
rs35825527	0.80[ASN][1000 genomes]
rs4140960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466836	0.82[ASN][1000 genomes]
rs66524549	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66552780	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66699011	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66970091	0.82[ASN][1000 genomes]
rs67210777	0.82[ASN][1000 genomes]
rs67263105	0.82[ASN][1000 genomes]
rs67327643	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67549880	0.82[ASN][1000 genomes]
rs67759336	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67765659	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67817582	0.82[ASN][1000 genomes]
rs67969832	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72607714	0.82[ASN][1000 genomes]
rs73220285	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794795	0.82[ASN][1000 genomes]
rs9640810	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122293600-122318600	Weak transcription	Lung	lung
2	chr7:122294000-122314400	Weak transcription	Fetal Lung	lung
3	chr7:122301400-122315200	Weak transcription	Gastric	stomach
4	chr7:122307000-122313800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:122308200-122316600	Weak transcription	Left Ventricle	heart
6	chr7:122308400-122314400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:122309000-122314200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:122311400-122316800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:122311800-122313800	Weak transcription	Ovary	ovary
10	chr7:122311800-122316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:122312000-122314000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:122312000-122316600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:122312000-122316800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:122312000-122317000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:122312400-122314400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:122312600-122313800	Weak transcription	Right Atrium	heart
17	chr7:122312600-122314600	Enhancers	Pancreas	Pancrea
18	chr7:122312800-122313800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:122312800-122316800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:122313000-122316600	Weak transcription	H9 Cell Line	embryonic stem cell

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