Variant report

Variant	rs4140960
Chromosome Location	chr7:122317278-122317279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10278811	1.00[ASN][1000 genomes]
rs10464665	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs10487754	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs1686	0.82[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17144645	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs17144729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17144731	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144754	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2159824	1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28540575	1.00[ASN][1000 genomes]
rs28642148	1.00[ASN][1000 genomes]
rs35825527	0.84[ASN][1000 genomes]
rs3919525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs56122498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56964412	0.83[ASN][1000 genomes]
rs57389578	0.83[ASN][1000 genomes]
rs58199807	0.83[ASN][1000 genomes]
rs6466836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466838	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs66524549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66552780	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66699011	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66798940	0.83[ASN][1000 genomes]
rs66884888	0.84[ASN][1000 genomes]
rs66970091	0.86[ASN][1000 genomes]
rs67210777	0.86[ASN][1000 genomes]
rs67253616	0.83[ASN][1000 genomes]
rs67263105	0.86[ASN][1000 genomes]
rs67327643	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67549880	0.86[ASN][1000 genomes]
rs67759336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67765659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67803746	0.84[ASN][1000 genomes]
rs67817582	0.86[ASN][1000 genomes]
rs67969832	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72607714	0.86[ASN][1000 genomes]
rs73220285	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7794795	0.86[ASN][1000 genomes]
rs9640810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122293600-122318600	Weak transcription	Lung	lung
2	chr7:122314200-122318200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:122314800-122322800	Weak transcription	Right Atrium	heart
4	chr7:122315000-122318200	Enhancers	Pancreas	Pancrea
5	chr7:122315000-122318400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:122315400-122322200	Weak transcription	Fetal Lung	lung
7	chr7:122316200-122318800	Enhancers	HepG2	liver
8	chr7:122316400-122317400	Enhancers	Stomach Mucosa	stomach
9	chr7:122316600-122318200	Enhancers	Gastric	stomach
10	chr7:122316600-122319000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:122316600-122319200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:122316600-122319200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:122316600-122320200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:122316800-122318800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:122316800-122319000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:122316800-122320400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:122316800-122320400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:122316800-122322800	Weak transcription	Left Ventricle	heart
19	chr7:122317000-122317600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:122317000-122317800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:122317000-122318400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:122317000-122318800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:122317000-122318800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:122317000-122319200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:122317200-122317600	Enhancers	Fetal Stomach	stomach

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