Variant report

Variant	rs56964412
Chromosome Location	chr7:122352082-122352083
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122337511..122339668-chr7:122352052..122353795,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188050	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10278811	0.83[ASN][1000 genomes]
rs10464665	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487754	0.83[ASN][1000 genomes]
rs1686	0.95[ASN][1000 genomes]
rs17144729	0.81[ASN][1000 genomes]
rs17144731	0.83[ASN][1000 genomes]
rs17144754	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2159824	0.96[ASN][1000 genomes]
rs28540575	0.83[ASN][1000 genomes]
rs28642148	0.83[ASN][1000 genomes]
rs35825527	0.95[ASN][1000 genomes]
rs3919525	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4140960	0.83[ASN][1000 genomes]
rs4727948	0.84[ASN][1000 genomes]
rs57389578	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58199807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466836	0.96[ASN][1000 genomes]
rs6466838	0.98[ASN][1000 genomes]
rs66524549	0.83[ASN][1000 genomes]
rs66552780	0.81[ASN][1000 genomes]
rs66699011	0.81[ASN][1000 genomes]
rs66798940	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66884888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66970091	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67210777	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67253616	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67263105	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67327643	0.81[ASN][1000 genomes]
rs67549880	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67759336	0.83[ASN][1000 genomes]
rs67765659	0.83[ASN][1000 genomes]
rs67803746	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67817582	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67969832	0.81[ASN][1000 genomes]
rs72607714	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73220285	0.81[ASN][1000 genomes]
rs7794795	0.96[ASN][1000 genomes]
rs9640810	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122336600-122359000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:122349200-122352600	Weak transcription	HepG2	liver

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