Variant report

Variant	rs3919525
Chromosome Location	chr7:122359350-122359351
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10278811	0.84[ASN][1000 genomes]
rs10464665	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1686	0.86[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs17144645	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs17144729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17144731	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs17144754	0.81[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2159824	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs28540575	0.84[ASN][1000 genomes]
rs28642148	0.84[ASN][1000 genomes]
rs35825527	0.96[ASN][1000 genomes]
rs4140960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4727948	0.83[ASN][1000 genomes]
rs56964412	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57389578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58199807	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6466838	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs66524549	0.84[ASN][1000 genomes]
rs66552780	0.82[ASN][1000 genomes]
rs66699011	0.82[ASN][1000 genomes]
rs66798940	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66884888	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66970091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67210777	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67253616	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67263105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67327643	0.82[ASN][1000 genomes]
rs67549880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67759336	0.84[ASN][1000 genomes]
rs67765659	0.84[ASN][1000 genomes]
rs67803746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67817582	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67969832	0.82[ASN][1000 genomes]
rs72607714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73220285	0.82[ASN][1000 genomes]
rs7794795	0.98[ASN][1000 genomes]
rs9640810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122359000-122359600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:122359000-122359600	Enhancers	Lung	lung
3	chr7:122359000-122359600	Enhancers	Right Atrium	heart
4	chr7:122359000-122359800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:122359000-122359800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:122359200-122359600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:122359200-122359600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:122359200-122359600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:122359200-122359600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:122359200-122359600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:122359200-122359600	Enhancers	Left Ventricle	heart
12	chr7:122359200-122359600	Enhancers	Pancreas	Pancrea
13	chr7:122359200-122359800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:122359200-122359800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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