Variant report

Variant	rs28540575
Chromosome Location	chr7:122321747-122321748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10278811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464665	0.84[ASN][1000 genomes]
rs10487754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1686	0.84[ASN][1000 genomes]
rs17144729	0.98[ASN][1000 genomes]
rs17144731	1.00[ASN][1000 genomes]
rs17144754	0.84[ASN][1000 genomes]
rs2159824	0.86[ASN][1000 genomes]
rs28642148	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35825527	0.84[ASN][1000 genomes]
rs3919525	0.84[ASN][1000 genomes]
rs4140960	1.00[ASN][1000 genomes]
rs56122498	0.95[ASN][1000 genomes]
rs56964412	0.83[ASN][1000 genomes]
rs57389578	0.83[ASN][1000 genomes]
rs58199807	0.83[ASN][1000 genomes]
rs6466836	0.86[ASN][1000 genomes]
rs6466838	0.84[ASN][1000 genomes]
rs66524549	1.00[ASN][1000 genomes]
rs66552780	0.98[ASN][1000 genomes]
rs66699011	0.98[ASN][1000 genomes]
rs66798940	0.83[ASN][1000 genomes]
rs66884888	0.84[ASN][1000 genomes]
rs66970091	0.86[ASN][1000 genomes]
rs67210777	0.86[ASN][1000 genomes]
rs67253616	0.83[ASN][1000 genomes]
rs67263105	0.86[ASN][1000 genomes]
rs67327643	0.98[ASN][1000 genomes]
rs67549880	0.86[ASN][1000 genomes]
rs67759336	1.00[ASN][1000 genomes]
rs67765659	1.00[ASN][1000 genomes]
rs67803746	0.84[ASN][1000 genomes]
rs67817582	0.86[ASN][1000 genomes]
rs67969832	0.98[ASN][1000 genomes]
rs72607714	0.86[ASN][1000 genomes]
rs73220285	0.98[ASN][1000 genomes]
rs7794795	0.86[ASN][1000 genomes]
rs9640810	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv981573	chr7:122320367-122322278	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122314800-122322800	Weak transcription	Right Atrium	heart
2	chr7:122315400-122322200	Weak transcription	Fetal Lung	lung
3	chr7:122316800-122322800	Weak transcription	Left Ventricle	heart
4	chr7:122317600-122326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:122317600-122327000	Weak transcription	Fetal Stomach	stomach
6	chr7:122318800-122322200	Weak transcription	Gastric	stomach
7	chr7:122318800-122322800	Weak transcription	Pancreas	Pancrea
8	chr7:122318800-122323200	Weak transcription	Lung	lung
9	chr7:122318800-122325200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:122319000-122322800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:122319000-122324800	Weak transcription	Stomach Mucosa	stomach
12	chr7:122319200-122323200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:122320200-122323200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:122320400-122325200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:122320400-122325200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:122320400-122325200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:122320400-122325200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:122320400-122325200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:122320400-122326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:122320800-122322000	Weak transcription	HepG2	liver
21	chr7:122320800-122329400	Weak transcription	Fetal Intestine Small	intestine

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