The 2.0 version of rSNPBase

Variant report

Variant rs56128856
Chromosome Location chr1:180281539-180281540
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
2 chr1:180247800-180284200 Weak transcription Fetal Thymus thymus
3 chr1:180254800-180282400 Weak transcription Fetal Muscle Leg muscle
4 chr1:180257600-180289600 Weak transcription Hela-S3 cervix
5 chr1:180257800-180287200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:180257800-180296200 Weak transcription Left Ventricle heart
7 chr1:180258400-180285200 Weak transcription Ovary ovary
8 chr1:180261200-180284200 Weak transcription K562 blood
9 chr1:180267000-180284400 Weak transcription GM12878-XiMat blood
10 chr1:180268200-180282800 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:180269200-180282000 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:180271600-180284600 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:180274600-180281600 Weak transcription Fetal Brain Male brain
14 chr1:180276200-180283800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:180276400-180281600 Weak transcription Primary B cells from peripheral blood blood
16 chr1:180276400-180284600 Weak transcription Fetal Lung lung
17 chr1:180277800-180283800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr1:180277800-180284200 Weak transcription Brain Substantia Nigra brain
19 chr1:180277800-180284800 Weak transcription Psoas Muscle Psoas
20 chr1:180278000-180282600 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr1:180278000-180284200 Weak transcription iPS-18 Cell Line embryonic stem cell
22 chr1:180278000-180285200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:180278000-180298200 Weak transcription Esophagus oesophagus
24 chr1:180278400-180282200 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:180278600-180282400 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:180278600-180282600 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:180278800-180282200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:180278800-180282800 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr1:180278800-180284400 Weak transcription Duodenum Mucosa Duodenum
30 chr1:180278800-180285400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr1:180278800-180286600 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr1:180278800-180296000 Weak transcription Pancreas Pancrea
33 chr1:180279000-180281600 Weak transcription HSMM muscle
34 chr1:180279000-180282400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:180279000-180285400 Weak transcription NHEK skin
36 chr1:180279000-180297600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:180279200-180288000 Weak transcription Brain Hippocampus Middle brain
38 chr1:180279400-180281600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:180279400-180284600 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr1:180279400-180288000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:180279400-180295400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:180279600-180282000 Weak transcription Colon Smooth Muscle Colon
43 chr1:180279600-180298800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:180279800-180281800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:180280000-180282800 Strong transcription Primary B cells from cord blood blood
46 chr1:180280000-180284000 Weak transcription Small Intestine intestine
47 chr1:180280200-180283000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:180280400-180282800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:180280400-180283000 Strong transcription HMEC breast
50 chr1:180280600-180282200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015