The 2.0 version of rSNPBase

Variant report

Variant rs2764454
Chromosome Location chr1:180249395-180249396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180231000-180257200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:180236200-180252200 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:180236400-180249800 Weak transcription Hela-S3 cervix
4 chr1:180236800-180257600 Weak transcription Fetal Brain Male brain
5 chr1:180238600-180255600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:180239200-180257200 Weak transcription Osteobl bone
7 chr1:180239400-180249600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:180240200-180259000 Weak transcription Colon Smooth Muscle Colon
9 chr1:180240600-180255600 Weak transcription Liver Liver
10 chr1:180240800-180249400 Weak transcription Left Ventricle heart
11 chr1:180240800-180258200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:180240800-180259400 Weak transcription HepG2 liver
13 chr1:180240800-180264000 Weak transcription Small Intestine intestine
14 chr1:180240800-180270800 Weak transcription NHLF lung
15 chr1:180241000-180254800 Weak transcription HMEC breast
16 chr1:180241000-180259600 Weak transcription NH-A brain
17 chr1:180241200-180257000 Weak transcription K562 blood
18 chr1:180241400-180250800 Strong transcription Primary T cells from cord blood blood
19 chr1:180241600-180251000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:180242000-180268400 Weak transcription NHDF-Ad bronchial
21 chr1:180242600-180257200 Weak transcription Brain Substantia Nigra brain
22 chr1:180243600-180257200 Weak transcription GM12878-XiMat blood
23 chr1:180243800-180255400 Weak transcription Fetal Brain Female brain
24 chr1:180243800-180268200 Weak transcription Pancreas Pancrea
25 chr1:180244000-180251600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:180244000-180257200 Weak transcription Brain Hippocampus Middle brain
27 chr1:180244000-180257400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:180244200-180257200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr1:180244200-180257800 Weak transcription Brain Germinal Matrix brain
30 chr1:180244200-180258200 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:180244200-180258400 Weak transcription Duodenum Mucosa Duodenum
32 chr1:180244200-180263000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:180244200-180270400 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:180244200-180278200 Weak transcription HSMMtube muscle
35 chr1:180244600-180249600 Weak transcription A549 lung
36 chr1:180244600-180252400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:180244600-180257600 Weak transcription Fetal Kidney kidney
38 chr1:180244800-180257600 Weak transcription Fetal Muscle Trunk muscle
39 chr1:180245000-180249600 Weak transcription Ovary ovary
40 chr1:180245000-180259800 Weak transcription Colonic Mucosa Colon
41 chr1:180245200-180249400 Weak transcription Primary T cells fromperipheralblood blood
42 chr1:180245200-180252000 Enhancers Primary monocytes fromperipheralblood blood
43 chr1:180245200-180253400 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr1:180245200-180256200 Weak transcription Esophagus oesophagus
45 chr1:180245200-180258200 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr1:180245200-180259200 Weak transcription Spleen Spleen
47 chr1:180245200-180261600 Weak transcription Right Ventricle heart
48 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
49 chr1:180245400-180249600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:180245400-180250000 Weak transcription Lung lung

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Last update: Aug 31, 2015