The 2.0 version of rSNPBase

Variant report

Variant rs4609392
Chromosome Location chr1:180427733-180427734
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180379000-180430800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr1:180392600-180446200 Weak transcription K562 blood
3 chr1:180401400-180430400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:180403400-180431200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:180403400-180448000 Weak transcription HMEC breast
6 chr1:180404200-180431800 Weak transcription NHEK skin
7 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
8 chr1:180413000-180429400 Weak transcription Fetal Intestine Small intestine
9 chr1:180417600-180431200 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr1:180418000-180431200 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:180418400-180430800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:180420600-180429600 Weak transcription Fetal Lung lung
13 chr1:180421000-180429000 Weak transcription Brain Substantia Nigra brain
14 chr1:180421000-180430400 Weak transcription Primary B cells from cord blood blood
15 chr1:180421000-180430600 Weak transcription Brain Anterior Caudate brain
16 chr1:180421000-180431200 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:180421000-180431800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr1:180421000-180448000 Weak transcription HSMM muscle
19 chr1:180421200-180429400 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:180421200-180430200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:180421200-180431200 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr1:180421200-180431200 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:180421200-180431400 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr1:180421200-180431800 Weak transcription A549 lung
25 chr1:180421200-180451600 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:180421400-180431000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:180421600-180429400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:180421600-180430600 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:180421600-180431200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:180421600-180431200 Weak transcription Ovary ovary
31 chr1:180422200-180430600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr1:180423000-180429400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:180423000-180430600 Weak transcription Stomach Smooth Muscle stomach
34 chr1:180423600-180429400 Weak transcription Fetal Stomach stomach
35 chr1:180424200-180430000 Weak transcription Thymus Thymus
36 chr1:180424400-180429800 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:180424400-180430800 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr1:180424800-180429400 Weak transcription Lung lung
39 chr1:180425000-180429400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:180425000-180429600 Weak transcription Primary hematopoietic stem cells blood
41 chr1:180425000-180429600 Weak transcription Fetal Muscle Leg muscle
42 chr1:180425600-180431400 Weak transcription Colon Smooth Muscle Colon
43 chr1:180425800-180457600 Weak transcription Aorta Aorta
44 chr1:180426000-180430400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:180426600-180429400 Weak transcription GM12878-XiMat blood
46 chr1:180426600-180430600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:180426600-180430600 Weak transcription Primary T cells from cord blood blood
48 chr1:180426600-180431000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:180426600-180431000 Weak transcription Duodenum Mucosa Duodenum
50 chr1:180426600-180431600 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015